Non-Coding RNA Search

Tra1-TCH01B030012

Sequence:


               
               AATCTAGGAGTTGGCGGGAACCCCACAGCATGTAACTTGACCCCTGTCGGCTTCAGAGCC
TGTGACAGAAGCATGGAACATTTCAGATCTTTACAGGCACCAGTTTGGTTACAGTCCAGA
TGGTGGACTCACTGCAGTGCTTTCTGCAGTGATACTGGATGCATCAAGATTGTGCTCCAC
TTGGGAGCTCCCTGGTGGCCTAGGGGCTAAGGATTCAGCACTGTCGCTGCTGTGGTTTGT
TGTCCCTGCTGTGGCGCGGGTTCGATTCCTAGCTTGAGAACTACTGCATGCCGCAGGGGA
GGCCAAAAAAATAAGGTCATGCTCCACCTGGAAAGTGCCTTCCTCCCCACCCTCTCGGTT
GCCTTGTAGCCCCCAAACCTCATTATCTACTCCTGTCTGCAAAACTAGAGGAGAAATCCC
ATAGGCACCGTCCGATTTTTAATCTACCCTCATGACAGTCCAGGTATAACTGGTCCATGC
AACAAAAAGAGCAGCCACCAGGGTTTTTAGGGCAGAAGGGCCCACCTTGGAAAGGGGGGC
CTTTTGCTTATACTGCTCATTTCCTTCGCTTGAAAAGGGCAAACTGGTTTGTCAAGGAGC
AGGAGAAGTGAAGGAAAGGGATCAAGAGCCGAGCTGACACTACATGCACCACACCTGTCA
GGTGCCTTTAAGCCATTAGCTCCCAGACCTCAGGAACCTGCTATTTCTAGCTGCTTGTCC
AGCTCGTAACAGAGTGCTGTGTGGCTGTGGCTTAATGAAGGTAACGCTTAATGACTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCTAGGAGTTGGCGGGAACCCCACAGCATGTAACTTGACCCCTGTCGGCTTCAGAGCC
TGTGACAGAAGCATGGAACATTTCAGATCTTTACAGGCACCAGTTTGGTTACAGTCCAGA
TGGTGGACTCACTGCAGTGCTTTCTGCAGTGATACTGGATGCATCAAGATTGTGCTCCAC
TTGGGAGCTCCCTGGTGGCCTAGGGGCTAAGGATTCAGCACTGTCGCTGCTGTGGTTTGT
TGTCCCTGCTGTGGCGCGGGTTCGATTCCTAGCTTGAGAACTACTGCATGCCGCAGGGGA
GGCCAAAAAAATAAGGTCATGCTCCACCTGGAAAGTGCCTTCCTCCCCACCCTCTCGGTT
GCCTTGTAGCCCCCAAACCTCATTATCTACTCCTGTCTGCAAAACTAGAGGAGAAATCCC
ATAGGCACCGTCCGATTTTTAATCTACCCTCATGACAGTCCAGGTATAACTGGTCCATGC
AACAAAAAGAGCAGCCACCAGGGTTTTTAGGGCAGAAGGGCCCACCTTGGAAAGGGGGGC
CTTTTGCTTATACTGCTCATTTCCTTCGCTTGAAAAGGGCAAACTGGTTTGTCAAGGAGC
AGGAGAAGTGAAGGAAAGGGATCAAGAGCCGAGCTGACACTACATGCACCACACCTGTCA
GGTGCCTTTAAGCCATTAGCTCCCAGACCTCAGGAACCTGCTATTTCTAGCTGCTTGTCC
AGCTCGTAACAGAGTGCTGTGTGGCTGTGGCTTAATGAAGGTAACGCTTAATGACTTTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               480-598, - strand, RNAz p=0.999117

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               480-598, - strand, RNAz p=0.999117

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               305-780, gnl|bosTau2|chr18 (19735082-19734599)
               

               
               305-780, gnl|Hg17|chr16 (52630082-52630699)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               305-780, gnl|bosTau2|chr18 (19735082-19734599)
               

               
               305-780, gnl|Hg17|chr16 (52630082-52630699)

	305-780, gnl\|bosTau2\|chr18 (19735082-19734599)
	305-780, gnl\|Hg17\|chr16 (52630082-52630699)