Non-Coding RNA Search

Tra1-TCH01B040084

Sequence:


               
               CGCTTCTTCCTCCCAATCTGTTGCTGCATTTTCCTGCCTGATTATTTTAAGTGATACCTT
GAGTCTGTTAACCATACTTTACATCAGAAATAGCTAAGGTggagttcctgtattgactca
gtggtaacaaacctgactagtatccatgaggatgctggttcggtccctggcctcgctcag
tgggttaaggatctggtgttgctgtgagctgtggtataggccacagacacagctcagatc
tggcattgttgtgactgtggcataggccagcggctgcagctccaattcagctcctagcct
gggaacctccatatgctgtgggtgtgaccctAAAAAGCCAAAAAAAAGAAAAAAAAAAAA
AAGAAAGAAATAGCCAAGGATCCAGAGGAATGGAGCAAATTGTATCATTGGAGAATTTCA
GTACTACTTCCAGGACATATGGTTTTTCACTCTGTTTAAATGTTAGAGTTGTTCTGCCCT
GTGGTCCTAATACATGTGGGACTACCAGGCATTCCAGCCCCAAAATTGAGGATTAAGGTT
TATTATAGTGACAGTTTCAACATATTTCTGTCCAGTCAGAGTTATTACTCTTGAAGAGGT
GAATAAGCAAGGAAAACAGAATAAACCAATCTCGGCTTCTCTTCATTGAGTCTGCTGAGG
TCACCCCTGAGGGTTTCACAGGGAAGAAAAATTCCTACTGTTAATTTATATTCAAACCTT
GCTGTTGGTGTTGCCAAGTCCTCTGTAAACATGACCAGTTTGGTAACTATTGAGGAAGCA
GTCATCATTTTCCCACTGACATACTAATTGCATGAATATGAATTGTAGTGTTGGAGACAT
ATTTCCCTTAAATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTTCTTCCTCCCAATCTGTTGCTGCATTTTCCTGCCTGATTATTTTAAGTGATACCTT
GAGTCTGTTAACCATACTTTACATCAGAAATAGCTAAGGTggagttcctgtattgactca
gtggtaacaaacctgactagtatccatgaggatgctggttcggtccctggcctcgctcag
tgggttaaggatctggtgttgctgtgagctgtggtataggccacagacacagctcagatc
tggcattgttgtgactgtggcataggccagcggctgcagctccaattcagctcctagcct
gggaacctccatatgctgtgggtgtgaccctAAAAAGCCAAAAAAAAGAAAAAAAAAAAA
AAGAAAGAAATAGCCAAGGATCCAGAGGAATGGAGCAAATTGTATCATTGGAGAATTTCA
GTACTACTTCCAGGACATATGGTTTTTCACTCTGTTTAAATGTTAGAGTTGTTCTGCCCT
GTGGTCCTAATACATGTGGGACTACCAGGCATTCCAGCCCCAAAATTGAGGATTAAGGTT
TATTATAGTGACAGTTTCAACATATTTCTGTCCAGTCAGAGTTATTACTCTTGAAGAGGT
GAATAAGCAAGGAAAACAGAATAAACCAATCTCGGCTTCTCTTCATTGAGTCTGCTGAGG
TCACCCCTGAGGGTTTCACAGGGAAGAAAAATTCCTACTGTTAATTTATATTCAAACCTT
GCTGTTGGTGTTGCCAAGTCCTCTGTAAACATGACCAGTTTGGTAACTATTGAGGAAGCA
GTCATCATTTTCCCACTGACATACTAATTGCATGAATATGAATTGTAGTGTTGGAGACAT
ATTTCCCTTAAATATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               594-713, - strand, RNAz p=0.884761

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               594-713, - strand, RNAz p=0.884761

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               366-856, gnl|bosTau2|chr14 (41097755-41098244)
               

               
               366-856, gnl|Hg17|chr8 (99767107-99766620)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               366-856, gnl|bosTau2|chr14 (41097755-41098244)
               

               
               366-856, gnl|Hg17|chr8 (99767107-99766620)

	366-856, gnl\|bosTau2\|chr14 (41097755-41098244)
	366-856, gnl\|Hg17\|chr8 (99767107-99766620)