Non-Coding RNA Search

Tra1-TCH01B080070

Sequence:


               
               TAGAGGTCATCGCTGAGTGTCCCATGATTTTTCCAGTTGAAAAACTCACAACTCACATGT
GTGTATTCTAATGATAGCACTAAAACTTAAAAAAAAAAAAAATAGAGCCCTGAAAGCTAT
TCTTATTGAGGACTGCATTTGTGGATAATGCATTCCTTTAAGACTGAATGATTCTGCCCT
TGGGCAGAGATCCCAATTAGGGAGGATTAGGTAACCTTTTTGCAGCAATGGGCAATACCA
TTCTTCTCTTCACCGTGCCTGTTTTTTGTTTGGGGATTTTTTTATTTTTTCTAAGTTAAG
TGAGGCTGAAGGTGGACATTGTGATTTTTCAGCTCCAGCTTGATGTGCCTTACTTGCTCC
CAGGAGAGTGCGGCATCGGCATGTGTACACATCCCTGCCTGGTTGGGGAGGCCTGGTTCT
GCTCCCTCCAGAGCAGAAAAGGCAGCAGATAACTGTGAACACTAGAGAATGGGAATCTAA
TATTTTCAATAGATTCTGGAATCAGAACTTCATTTTACAGCATGTTTCTGTATAAACTTG
AACCTTGTGTGAGGTTTACCATGTGTTACTAATTAAGCATCTCTGGTTCCAAGTGGCAGA
GGAGAAAGTGGCTCTTTCACTGGAAAGCAAAACAAACAAAACTGTTCATTTAGCCCCAGT
AGAGACTGGGAGCAGAGCATCTTCATAGATTTAGTGCAGAGGTTGGCAAATTTTTTTCTG
CAAAAGGCCAGATAAAAATATTTCCAGCTATGTGAACTATACAGTCTCTACTGCAGTTAA
CCAGCCCTGTTGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAGGTCATCGCTGAGTGTCCCATGATTTTTCCAGTTGAAAAACTCACAACTCACATGT
GTGTATTCTAATGATAGCACTAAAACTTAAAAAAAAAAAAAATAGAGCCCTGAAAGCTAT
TCTTATTGAGGACTGCATTTGTGGATAATGCATTCCTTTAAGACTGAATGATTCTGCCCT
TGGGCAGAGATCCCAATTAGGGAGGATTAGGTAACCTTTTTGCAGCAATGGGCAATACCA
TTCTTCTCTTCACCGTGCCTGTTTTTTGTTTGGGGATTTTTTTATTTTTTCTAAGTTAAG
TGAGGCTGAAGGTGGACATTGTGATTTTTCAGCTCCAGCTTGATGTGCCTTACTTGCTCC
CAGGAGAGTGCGGCATCGGCATGTGTACACATCCCTGCCTGGTTGGGGAGGCCTGGTTCT
GCTCCCTCCAGAGCAGAAAAGGCAGCAGATAACTGTGAACACTAGAGAATGGGAATCTAA
TATTTTCAATAGATTCTGGAATCAGAACTTCATTTTACAGCATGTTTCTGTATAAACTTG
AACCTTGTGTGAGGTTTACCATGTGTTACTAATTAAGCATCTCTGGTTCCAAGTGGCAGA
GGAGAAAGTGGCTCTTTCACTGGAAAGCAAAACAAACAAAACTGTTCATTTAGCCCCAGT
AGAGACTGGGAGCAGAGCATCTTCATAGATTTAGTGCAGAGGTTGGCAAATTTTTTTCTG
CAAAAGGCCAGATAAAAATATTTCCAGCTATGTGAACTATACAGTCTCTACTGCAGTTAA
CCAGCCCTGTTGTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-392, + strand, RNAz p=0.995034

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-392, + strand, RNAz p=0.995034

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               103-88, CJ027431 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ027431.1|), blast E-value=4e-16, identity=100% 
               

               
               123-245, DB355874 HEMBA1 Homo sapiens cDNA clone HEMBA1002449 3', mRNA 
(dbj|DB355874.1|), blast E-value=8e-33, identity=90.24%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               103-88, CJ027431 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ027431.1|), blast E-value=4e-16, identity=100% 
               

               
               123-245, DB355874 HEMBA1 Homo sapiens cDNA clone HEMBA1002449 3', mRNA 
(dbj|DB355874.1|), blast E-value=8e-33, identity=90.24%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-794, gnl|bosTau2|chr22 (27912064-27911299)
               

               
               3-794, gnl|Hg17|chr3 (64561349-64560577)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-794, gnl|bosTau2|chr22 (27912064-27911299)
               

               
               3-794, gnl|Hg17|chr3 (64561349-64560577)

	103-88, CJ027431 full-length enriched swine cDNA library, adult trachea Sus (dbj\|CJ027431.1\|), blast E-value=4e-16, identity=100%
	123-245, DB355874 HEMBA1 Homo sapiens cDNA clone HEMBA1002449 3', mRNA (dbj\|DB355874.1\|), blast E-value=8e-33, identity=90.24%

	3-794, gnl\|bosTau2\|chr22 (27912064-27911299)
	3-794, gnl\|Hg17\|chr3 (64561349-64560577)