Non-Coding RNA Search

Tra1-TCH01B090103

Sequence:


               
               ATGTTAAGTCACATCACCTTTATTAAGCCTCAAGACAAACCATCTGAGGTGTCTTTTCAA
ATCAGAGCACTTAGCTATTGCTTTGTAACAATCACAAAATCACAAGGTCATGggaattcc
cactgtggtgcagtgggttaagaatccagccgcagtggcttgcatcactgtggaggcgca
ggttcaatcccaggtcaggcacagtgggttaaaggatcccatgttgctgcagctatggcg
taggtcacagctgcagctcagattcaatccctggcccaggaacttccatatgcGATAGTG
TGGCCTTAAAAAAAAAAAAAATCACAAGGGCACATACCAATAAATATTCATTTCTGGAGC
ATCACAGGGAGGCTGGGTTGGATGATTCAGGCTGGTGGCAGCTGGCTCGGCTCCTTACTG
CAGGTTGAGCTCATGGGATTTATTCTGGGTCCCAGGCTGCCTGGGTAGGCTCTTCTCATA
GTGAGGACAAAAGTGCCAGATGGGAACTGGGAATGGGTGAGAGCACCTAAAGCTTAAGCA
CTCTTTCAGTGATGATGCCCGCCATGTTCCATTGGCTAACACACATCCATGGCCAGGTCA
AGTCAAGAGATGGGAAATTACACCCTGGCTCTGGAGGGAGGGACTATAAAATTACATAGC
ATGAGGTGTGGATGCTAGGAGGGTGAAGACCAAGGCCAGGGATTCAGTGAACCACACTTA
ACCGCTGCTCTGAAGAATTCATTCCACTCTTCACCTGCATCGCCTTCTGGGACCACTCCC
TCCCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTAAGTCACATCACCTTTATTAAGCCTCAAGACAAACCATCTGAGGTGTCTTTTCAA
ATCAGAGCACTTAGCTATTGCTTTGTAACAATCACAAAATCACAAGGTCATGggaattcc
cactgtggtgcagtgggttaagaatccagccgcagtggcttgcatcactgtggaggcgca
ggttcaatcccaggtcaggcacagtgggttaaaggatcccatgttgctgcagctatggcg
taggtcacagctgcagctcagattcaatccctggcccaggaacttccatatgcGATAGTG
TGGCCTTAAAAAAAAAAAAAATCACAAGGGCACATACCAATAAATATTCATTTCTGGAGC
ATCACAGGGAGGCTGGGTTGGATGATTCAGGCTGGTGGCAGCTGGCTCGGCTCCTTACTG
CAGGTTGAGCTCATGGGATTTATTCTGGGTCCCAGGCTGCCTGGGTAGGCTCTTCTCATA
GTGAGGACAAAAGTGCCAGATGGGAACTGGGAATGGGTGAGAGCACCTAAAGCTTAAGCA
CTCTTTCAGTGATGATGCCCGCCATGTTCCATTGGCTAACACACATCCATGGCCAGGTCA
AGTCAAGAGATGGGAAATTACACCCTGGCTCTGGAGGGAGGGACTATAAAATTACATAGC
ATGAGGTGTGGATGCTAGGAGGGTGAAGACCAAGGCCAGGGATTCAGTGAACCACACTTA
ACCGCTGCTCTGAAGAATTCATTCCACTCTTCACCTGCATCGCCTTCTGGGACCACTCCC
TCCCCTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               409-498, + strand, RNAz p=0.912902

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               409-498, + strand, RNAz p=0.912902

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               409-780, gnl|bosTau2|chr13 (32821445-32821834)
               

               
               409-780, gnl|Hg17|chr20 (6015886-6015095)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               409-780, gnl|bosTau2|chr13 (32821445-32821834)
               

               
               409-780, gnl|Hg17|chr20 (6015886-6015095)

	409-780, gnl\|bosTau2\|chr13 (32821445-32821834)
	409-780, gnl\|Hg17\|chr20 (6015886-6015095)