Tra1-TCH01B100038
               |  | ATGCCTCACATACAGCAAACGCTCAGGAAATGCTGGCTGCAGTTATTTTTATGGTGATCA
TTACATAGCATGCTTGTGAGAGGCCTGGTGTTTACAGGGTAGGGAATGGTGATTTTTACT
CAGAATCAACCAAAGAAAGGAAAGGAAGAAGGGAGGATATAAGTCATTAAAGCATGACTC
AGTTCTTTGATGGGCAAAATGCTCTGGGGATTTATAAAGCTCTAACGATAAGCAACGTGT
CGTGTTTTGTTTCTTCCTGGGGTCTGGCCACGAGCTCAGCTCATGATGGACAGTCCATCC
CCTCCAGGTGCTCGAATAGTTTCCATCCTTGATGAAGCACCTCACCCGTCAGGCTCTTAA
CTGTTATTTATTGGACCTGCGCAGCCCAACAAGGCAGGTCCTACCCCTGTGAGCCATGAA
CACGATGTATAATAAAGAAAAGGTAGCAAAGTGTGCCAGCGTGCCAAGGGGCATCAAGAG
AGCACATTCTCCATCCTGGCCTAGGAAAGATGAGACAGACACTGGTGCATTATCCTCTGC
AGAGAGACCCTGTCTACTTGGAAGGTCAGCCATGAGCAGCGCCCCAGCCGTAATTAGCTA
CACTGCTGACATGCGAATGGTGACCCAGCGTATGGTCTGTGATGGACGTCACCCTTGACT
CAGTATTCCGGTTTGTAGATGATCCGAGGGCACATTTTCCAGAGAGTTCTGTTTTGAAAG
CATGAGCAGCAAAGGACAGATGCCCCCGGTTGACTGGCTTCTGAGCAGATGGGACACAGC
ATTCTCTGAAAGCCTCCTGGTTCTCCTGCAAATAAGTTTCTCAGATGCATATATTTAGGG
AAACAATTCATCAGTGACGGATGACAAAACCATCTGGCTCTAGGGACTGGAAACAAAAA | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | ATGCCTCACATACAGCAAACGCTCAGGAAATGCTGGCTGCAGTTATTTTTATGGTGATCA
TTACATAGCATGCTTGTGAGAGGCCTGGTGTTTACAGGGTAGGGAATGGTGATTTTTACT
CAGAATCAACCAAAGAAAGGAAAGGAAGAAGGGAGGATATAAGTCATTAAAGCATGACTC
AGTTCTTTGATGGGCAAAATGCTCTGGGGATTTATAAAGCTCTAACGATAAGCAACGTGT
CGTGTTTTGTTTCTTCCTGGGGTCTGGCCACGAGCTCAGCTCATGATGGACAGTCCATCC
CCTCCAGGTGCTCGAATAGTTTCCATCCTTGATGAAGCACCTCACCCGTCAGGCTCTTAA
CTGTTATTTATTGGACCTGCGCAGCCCAACAAGGCAGGTCCTACCCCTGTGAGCCATGAA
CACGATGTATAATAAAGAAAAGGTAGCAAAGTGTGCCAGCGTGCCAAGGGGCATCAAGAG
AGCACATTCTCCATCCTGGCCTAGGAAAGATGAGACAGACACTGGTGCATTATCCTCTGC
AGAGAGACCCTGTCTACTTGGAAGGTCAGCCATGAGCAGCGCCCCAGCCGTAATTAGCTA
CACTGCTGACATGCGAATGGTGACCCAGCGTATGGTCTGTGATGGACGTCACCCTTGACT
CAGTATTCCGGTTTGTAGATGATCCGAGGGCACATTTTCCAGAGAGTTCTGTTTTGAAAG
CATGAGCAGCAAAGGACAGATGCCCCCGGTTGACTGGCTTCTGAGCAGATGGGACACAGC
ATTCTCTGAAAGCCTCCTGGTTCTCCTGCAAATAAGTTTCTCAGATGCATATATTTAGGG
AAACAATTCATCAGTGACGGATGACAAAACCATCTGGCTCTAGGGACTGGAAACAAAAA | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map