Non-Coding RNA Search

Tra1-TCH01B110085

Sequence:


               
               AATCAGGTTCAACGTGAACCTTGTCCTGGCACAAGGAAGTGTATCTGAGCGCTTAATTGA
AAAATGCACACAAAGTAAGCGGCTGGTAATTGGGTCAGTGAATAGCAATGTGATGCAGGC
TTTTGCAGAGGCTTCAGGAGCAGTGCCAGTGGCCTATGTTACACAAGTGAATGAAAACTG
TGTGGGCAGCGGGGTCTATGTGACCTTCTGGAGAAACGTTCCCTTCAGTGCTGCAGTGCA
GATCCAAAGAATAGCAATCATGTTAAAAACAGAGGGAATGAATTTGGTGACAGTAGTGCT
GACTAGCCCAATCCCTGCCCAGATGCAAGCCAAAGAAGATAGGTTCTGGACTTGTGCCTA
TCGCCTGCATTGTGCTCTAAAAGAGCAGAAGGTCTTCCTCGGAGGGGGCACAGTTGAATT
TTTATGTCTTAGCCATCTTCAAATTCTTGCAGAGCGATCTCTGCATAAAGGAAACCAAGG
CTGTTCAGAATGGCTTCGTAATACTTCCTCTTGGCTGGCCTCATCTGTGGCACTATACAG
ACCAACTGTGCTTAAATGCCTGGCAAATGGATGGCACAGGTACCTTTCAACTCTCCTATG
TAATACTGCCAGTTACTCATCAGAATGTGAAGCCAGCACATTCATTCAGCAGCATCTGCA
AAATGCAGTAGACTCTGGCTCTCCTTTGTCTTACATCTTGAATGAATATACTAAACTAAA
TAGTGGAATTTTTAATTCAGGCATTTCAGATAAACTAGAAGAGATTCCAAGAGTTTATGA
CATTGTTACACCAAAGATTGAGGCATGGCGCCGAGCTTTGGATTTAGTACTGTTAGTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCAGGTTCAACGTGAACCTTGTCCTGGCACAAGGAAGTGTATCTGAGCGCTTAATTGA
AAAATGCACACAAAGTAAGCGGCTGGTAATTGGGTCAGTGAATAGCAATGTGATGCAGGC
TTTTGCAGAGGCTTCAGGAGCAGTGCCAGTGGCCTATGTTACACAAGTGAATGAAAACTG
TGTGGGCAGCGGGGTCTATGTGACCTTCTGGAGAAACGTTCCCTTCAGTGCTGCAGTGCA
GATCCAAAGAATAGCAATCATGTTAAAAACAGAGGGAATGAATTTGGTGACAGTAGTGCT
GACTAGCCCAATCCCTGCCCAGATGCAAGCCAAAGAAGATAGGTTCTGGACTTGTGCCTA
TCGCCTGCATTGTGCTCTAAAAGAGCAGAAGGTCTTCCTCGGAGGGGGCACAGTTGAATT
TTTATGTCTTAGCCATCTTCAAATTCTTGCAGAGCGATCTCTGCATAAAGGAAACCAAGG
CTGTTCAGAATGGCTTCGTAATACTTCCTCTTGGCTGGCCTCATCTGTGGCACTATACAG
ACCAACTGTGCTTAAATGCCTGGCAAATGGATGGCACAGGTACCTTTCAACTCTCCTATG
TAATACTGCCAGTTACTCATCAGAATGTGAAGCCAGCACATTCATTCAGCAGCATCTGCA
AAATGCAGTAGACTCTGGCTCTCCTTTGTCTTACATCTTGAATGAATATACTAAACTAAA
TAGTGGAATTTTTAATTCAGGCATTTCAGATAAACTAGAAGAGATTCCAAGAGTTTATGA
CATTGTTACACCAAAGATTGAGGCATGGCGCCGAGCTTTGGATTTAGTACTGTTAGTACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56605860|ref|NP_001008502.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56605860|ref|NP_001008502.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               600-719, - strand, RNAz p=0.510942

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               600-719, - strand, RNAz p=0.510942

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr17 (20246513-20245674)
               

               
               1-840, gnl|Hg17|chr4 (124021864-124022703)
               

               
               1-840, gnl|Mm7|chr3 (37131052-37131885)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr17 (20246513-20245674)
               

               
               1-840, gnl|Hg17|chr4 (124021864-124022703)
               

               
               1-840, gnl|Mm7|chr3 (37131052-37131885)

	1-840, gnl\|bosTau2\|chr17 (20246513-20245674)
	1-840, gnl\|Hg17\|chr4 (124021864-124022703)
	1-840, gnl\|Mm7\|chr3 (37131052-37131885)