Non-Coding RNA Search

Tra1-TCH01B120005

Sequence:


               
               CTTCCTGGAGCCTTCTCGTCCAAATCAAGTGTTCCCTCCGCTGAGCTCTTTGGCTCCTAC
CTCTCCTAGAACTTACTCTATGATGCTTTATTTATTTGTAACTAAAAACTCCTCCTTGTC
CTCATGTAGTCAGTTTTCCCCTGGCCGGGCCGCGTAATTCAGAATTTAAGAATGTGAACT
ACTGAGACTAATGGCCTGAGTTTGAACCCCACCTCCGTCATTTGCCAGTGTGTGACTCGG
GCTTGGGCAAGTTACTTGGCGCCTCTGAGTGTCAGCCTTCTCATCTGTAAAATGGAGAAG
ACAGTACCTCCCTGCTTGAATTACTGTGACGATTACCTGAGTTGCTCCATGCAGAGAGCT
GAGCACAGCGCCTGGCATGCAGCAAACGCTTGGCAGATGTCAGCTCTCGAAGCCCTCCCT
GCATTGGAGAGTAATTCCGGATGGCACCGGCCCGGCAGAGCAGGGATCCGCCTGTCTGGC
CGCTTCCCGCCCTTATCTCCCTGGCCATCTCTCTCTCTGAAAGGCTCACCCCTGGCTGTG
TGCACCAGGATGAGGTGATGGCAGGCTCGCCCTAGAGAGGAGCTTTTGTTTCCAGGGCTC
AGCCCAAACTGTCTGGGGTGCGATTTTACATAACTAGCTATGGGCCTCCGTCAGTGAGGA
AATTTACATCATTTGACTCACCCATGTGGGAACCTTCCCCATCCGGCTGAGCTCCTTGGA
TTGGCCACAGGTGCTCAGTGCCTCCTCCAATGCTGTTCTGTAGAGAGGACCCATCTTTTG
TAGAGAGAGACCCCAAGCTGACTCATCCGTTAGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCTGGAGCCTTCTCGTCCAAATCAAGTGTTCCCTCCGCTGAGCTCTTTGGCTCCTAC
CTCTCCTAGAACTTACTCTATGATGCTTTATTTATTTGTAACTAAAAACTCCTCCTTGTC
CTCATGTAGTCAGTTTTCCCCTGGCCGGGCCGCGTAATTCAGAATTTAAGAATGTGAACT
ACTGAGACTAATGGCCTGAGTTTGAACCCCACCTCCGTCATTTGCCAGTGTGTGACTCGG
GCTTGGGCAAGTTACTTGGCGCCTCTGAGTGTCAGCCTTCTCATCTGTAAAATGGAGAAG
ACAGTACCTCCCTGCTTGAATTACTGTGACGATTACCTGAGTTGCTCCATGCAGAGAGCT
GAGCACAGCGCCTGGCATGCAGCAAACGCTTGGCAGATGTCAGCTCTCGAAGCCCTCCCT
GCATTGGAGAGTAATTCCGGATGGCACCGGCCCGGCAGAGCAGGGATCCGCCTGTCTGGC
CGCTTCCCGCCCTTATCTCCCTGGCCATCTCTCTCTCTGAAAGGCTCACCCCTGGCTGTG
TGCACCAGGATGAGGTGATGGCAGGCTCGCCCTAGAGAGGAGCTTTTGTTTCCAGGGCTC
AGCCCAAACTGTCTGGGGTGCGATTTTACATAACTAGCTATGGGCCTCCGTCAGTGAGGA
AATTTACATCATTTGACTCACCCATGTGGGAACCTTCCCCATCCGGCTGAGCTCCTTGGA
TTGGCCACAGGTGCTCAGTGCCTCCTCCAATGCTGTTCTGTAGAGAGGACCCATCTTTTG
TAGAGAGAGACCCCAAGCTGACTCATCCGTTAGCTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               503-662, - strand, RNAz p=0.987094

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               503-662, - strand, RNAz p=0.987094

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-817, gnl|bosTau2|chr8 (57945056-57945860)
               

               
               1-817, gnl|Hg17|chr9 (116015627-116016449)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-817, gnl|bosTau2|chr8 (57945056-57945860)
               

               
               1-817, gnl|Hg17|chr9 (116015627-116016449)

	1-817, gnl\|bosTau2\|chr8 (57945056-57945860)
	1-817, gnl\|Hg17\|chr9 (116015627-116016449)