Non-Coding RNA Search

Tra1-TCH01B120046

Sequence:


               
               TGGCGTTGAGGGGCCACCATTCAACTCCCTACAGGTGGTATGTTGACTTTCGCATTTAGG
GAGAGGCTATGACAAAGAGGGGTACCTGGGAAGCAGTGAGGTTTTTCTTTTCACTCCACG
TTTTCATCATCTGTGGAGCTATTCCCAATGTCCGCAGTGACTCTCCACTGATGATAAGAT
AATGACTGGATTTTCCTTTATGAATAATTGTAGAAAGATGTCCTAGCCATCATTTCTTTT
ACCTTTAGCATTGGTGTTTGGGTTACAGTGGTCAATGTTATAGACTTAACCATAGACCCC
AGAGAATTCCTGTGTGAACATGTACCTCTGTGTGTATCTGTGTGTCTTCTCTCCGAGGAA
AGTAAATACAGTTATTTGCTTTTGAACATTTCTAAGAATTCTGATTCCTCCCTAGATTTT
GTGACACAGCACACGCCGCTGTGGGCTGACCCAATACACACACACCCCTTGGCTTCTCTT
CCAACCAGGAGCCGGGAAGCACTGACAGCTGCCCTGCAGCCCAAAGACCAGTTTTGCTAG
TAGATTTCCTAGTTTTTCCATGACCCCAGCTGAGCAAATGTTCTTTAGATTTGACCTGGA
AAACCCTGGCATGTGTGTTTTCAAGTTTCACAAGCCACGACTCATGTACCATCTTCCCTT
GGACCACCCACAGTGAGTCCCATCTTGGTTTCCCCAAGCCAAGTCCCCACAATGGGACGG
TTAGGCAATGTGGATGGATGACTGTTTGTGTAAAGGCTGGAAACCAGTTTTCTATGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGTTGAGGGGCCACCATTCAACTCCCTACAGGTGGTATGTTGACTTTCGCATTTAGG
GAGAGGCTATGACAAAGAGGGGTACCTGGGAAGCAGTGAGGTTTTTCTTTTCACTCCACG
TTTTCATCATCTGTGGAGCTATTCCCAATGTCCGCAGTGACTCTCCACTGATGATAAGAT
AATGACTGGATTTTCCTTTATGAATAATTGTAGAAAGATGTCCTAGCCATCATTTCTTTT
ACCTTTAGCATTGGTGTTTGGGTTACAGTGGTCAATGTTATAGACTTAACCATAGACCCC
AGAGAATTCCTGTGTGAACATGTACCTCTGTGTGTATCTGTGTGTCTTCTCTCCGAGGAA
AGTAAATACAGTTATTTGCTTTTGAACATTTCTAAGAATTCTGATTCCTCCCTAGATTTT
GTGACACAGCACACGCCGCTGTGGGCTGACCCAATACACACACACCCCTTGGCTTCTCTT
CCAACCAGGAGCCGGGAAGCACTGACAGCTGCCCTGCAGCCCAAAGACCAGTTTTGCTAG
TAGATTTCCTAGTTTTTCCATGACCCCAGCTGAGCAAATGTTCTTTAGATTTGACCTGGA
AAACCCTGGCATGTGTGTTTTCAAGTTTCACAAGCCACGACTCATGTACCATCTTCCCTT
GGACCACCCACAGTGAGTCCCATCTTGGTTTCCCCAAGCCAAGTCCCCACAATGGGACGG
TTAGGCAATGTGGATGGATGACTGTTTGTGTAAAGGCTGGAAACCAGTTTTCTATGATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               335-450, - strand, RNAz p=0.525432
               

               
               660-779, - strand, RNAz p=0.687223

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-450, - strand, RNAz p=0.525432
               

               
               660-779, - strand, RNAz p=0.687223

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               9-779, gnl|bosTau2|chr5 (50483751-50484512)
               

               
               9-779, gnl|Hg17|chr12 (27838926-27839714)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-779, gnl|bosTau2|chr5 (50483751-50484512)
               

               
               9-779, gnl|Hg17|chr12 (27838926-27839714)

	335-450, - strand, RNAz p=0.525432
	660-779, - strand, RNAz p=0.687223

	9-779, gnl\|bosTau2\|chr5 (50483751-50484512)
	9-779, gnl\|Hg17\|chr12 (27838926-27839714)