Non-Coding RNA Search

Tra1-TCH01C020059

Sequence:


               
               TCACACCAGCAAGTCTTTTGTATGTCGTTAGGGACTCAACTCTTTTAACTCCTGTTCAAA
GCTCCAGCTCTTGAGCAGTGTTTGCGTGCAGTTACACACGCACCAGCTCGCATAGCCCTG
CTTGAGTATTAAAATGCAATCAGAATGCTCCCTCTCTCCCCAGCCAGTCTGCCTGAAGCA
TACATCTAGTATGCCATTCCAGATATTTCTGAAGCCAGGGAGAAAAGTTTTTTTTCAGAA
GTTTAAACTAAACCTACTAAGGCATTTGAGCCCTTCACAGTCTATCTGCAAACCATCTTT
GCAGCCATGTCTTCCGCTATAGGTATGCTACGAGCCTTGCCAGAAACACCACCCATTTAC
AAATCATCAAAGAGAAAATGAGGCCAAAGCAAAAGGGAGCCAACCTGTTGCAGTAAGTAA
TCATGTAAGAATTTTAAGTAGGAAAGAGACAGGATCAGATATTCTTTAGACTCTCCCGAG
TAGCAGGGAAGACCCAGAGAGAAATATCTATTGGAGCTTATTAGGTATTAGATGATGTTG
TCATCAGCTTACAGCTGAGAAATGTGTGTCTTCTGGAAGTTAAGTGACTTACTCAAGAGC
ATTCATACAAAACAAGATTCAAAACCCACCAGAACTTCACTGACTCCCTAATGAGCACTT
AATCCATATCTCCCGGTGAAACACTGGGGCAAACAATATTCAAGGCTTCTCAGAAGGTTT
TTAAAATTTTAATTATCCAGAAATAGCAGTTCTGGATCTAACCAGTTAACAAATTTCTTT
CCTCTCTTTTGTCTCTTAGTGCTCTGTTCCNAACACAATGGTTAGTACTGTGGGCCATTC
TTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACACCAGCAAGTCTTTTGTATGTCGTTAGGGACTCAACTCTTTTAACTCCTGTTCAAA
GCTCCAGCTCTTGAGCAGTGTTTGCGTGCAGTTACACACGCACCAGCTCGCATAGCCCTG
CTTGAGTATTAAAATGCAATCAGAATGCTCCCTCTCTCCCCAGCCAGTCTGCCTGAAGCA
TACATCTAGTATGCCATTCCAGATATTTCTGAAGCCAGGGAGAAAAGTTTTTTTTCAGAA
GTTTAAACTAAACCTACTAAGGCATTTGAGCCCTTCACAGTCTATCTGCAAACCATCTTT
GCAGCCATGTCTTCCGCTATAGGTATGCTACGAGCCTTGCCAGAAACACCACCCATTTAC
AAATCATCAAAGAGAAAATGAGGCCAAAGCAAAAGGGAGCCAACCTGTTGCAGTAAGTAA
TCATGTAAGAATTTTAAGTAGGAAAGAGACAGGATCAGATATTCTTTAGACTCTCCCGAG
TAGCAGGGAAGACCCAGAGAGAAATATCTATTGGAGCTTATTAGGTATTAGATGATGTTG
TCATCAGCTTACAGCTGAGAAATGTGTGTCTTCTGGAAGTTAAGTGACTTACTCAAGAGC
ATTCATACAAAACAAGATTCAAAACCCACCAGAACTTCACTGACTCCCTAATGAGCACTT
AATCCATATCTCCCGGTGAAACACTGGGGCAAACAATATTCAAGGCTTCTCAGAAGGTTT
TTAAAATTTTAATTATCCAGAAATAGCAGTTCTGGATCTAACCAGTTAACAAATTTCTTT
CCTCTCTTTTGTCTCTTAGTGCTCTGTTCCNAACACAATGGTTAGTACTGTGGGCCATTC
TTTTAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               117-233, - strand, RNAz p=0.825405
               

               
               469-574, + strand, RNAz p=0.578331

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-233, - strand, RNAz p=0.825405
               

               
               469-574, + strand, RNAz p=0.578331

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-649, gnl|bosTau2|chr3 (65965537-65964898)
               

               
               1-649, gnl|Hg17|chr1 (50631133-50630467)
               

               
               1-649, gnl|Mm7|chr4 (109329664-109330304)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-649, gnl|bosTau2|chr3 (65965537-65964898)
               

               
               1-649, gnl|Hg17|chr1 (50631133-50630467)
               

               
               1-649, gnl|Mm7|chr4 (109329664-109330304)

	117-233, - strand, RNAz p=0.825405
	469-574, + strand, RNAz p=0.578331

	1-649, gnl\|bosTau2\|chr3 (65965537-65964898)
	1-649, gnl\|Hg17\|chr1 (50631133-50630467)
	1-649, gnl\|Mm7\|chr4 (109329664-109330304)