Non-Coding RNA Search

Tra1-TCH01C040088

Sequence:


               
               AGTGACATTTTGATCATTCCTTATATGACTTGAAATGAACCTCGGGGTGAAACATCCGCA
GGCTGAAACTTTTAAACTCAACCTTCCAGATAAATCCTTCTATTACAGTTTTTCTCTAGT
TACTTTCATGGCAAAATGTAGGAAAACAGCACCAGAAACGGAATGAGGAAACCTCGGTCT
TACTCCCAGTTCTGCTGTCTGATCCTGGGAAAGTCACTGAACCTCCCTGAACCTCATCTT
ATCAACACATTCAGATGAGCTTTAAGATCTCTAAGTTCCCTTTACTATGTGTACAGAATA
TAGTAAAATTCTATATTTCTGCCTTACTGCTGGGTGTGTTCTTTGGGATTTAGCGCTTAC
TATTCTATCTTCAATCCATTCATTCATTTATCAAATATCGAGGTGGGAATAACTAAGTAA
CCAAGCTAGAGAATTCTGGGAAATTTTTCCAGTGAGTTGCATTTCAGCTGGGTCTTAAAG
GCTGAACAGAAATCTGTTATGTGAATAGAAGACTAAGCCATTCTAGGCAGAGAGGACACT
TCCAGTGCCCAGGGCGCTCAGGGCCCCTAGCACACTGAGGGGCTTGATAAGAGTTCAAAG
GAGACAGGATTTTTGCTGAGTCTGGCCTCCTTGGCTTATAAGAAATGGGAGGAAAGTATA
AACTGGCAAAGTGATACGGTCAAGTTTGTGTTTTGGAAAAACACTCCTGAGAGGAATGTG
AAGTGTGGAAGAAACTGAAATCAGAGAGATCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGACATTTTGATCATTCCTTATATGACTTGAAATGAACCTCGGGGTGAAACATCCGCA
GGCTGAAACTTTTAAACTCAACCTTCCAGATAAATCCTTCTATTACAGTTTTTCTCTAGT
TACTTTCATGGCAAAATGTAGGAAAACAGCACCAGAAACGGAATGAGGAAACCTCGGTCT
TACTCCCAGTTCTGCTGTCTGATCCTGGGAAAGTCACTGAACCTCCCTGAACCTCATCTT
ATCAACACATTCAGATGAGCTTTAAGATCTCTAAGTTCCCTTTACTATGTGTACAGAATA
TAGTAAAATTCTATATTTCTGCCTTACTGCTGGGTGTGTTCTTTGGGATTTAGCGCTTAC
TATTCTATCTTCAATCCATTCATTCATTTATCAAATATCGAGGTGGGAATAACTAAGTAA
CCAAGCTAGAGAATTCTGGGAAATTTTTCCAGTGAGTTGCATTTCAGCTGGGTCTTAAAG
GCTGAACAGAAATCTGTTATGTGAATAGAAGACTAAGCCATTCTAGGCAGAGAGGACACT
TCCAGTGCCCAGGGCGCTCAGGGCCCCTAGCACACTGAGGGGCTTGATAAGAGTTCAAAG
GAGACAGGATTTTTGCTGAGTCTGGCCTCCTTGGCTTATAAGAAATGGGAGGAAAGTATA
AACTGGCAAAGTGATACGGTCAAGTTTGTGTTTTGGAAAAACACTCCTGAGAGGAATGTG
AAGTGTGGAAGAAACTGAAATCAGAGAGATCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               157-262, - strand, RNAz p=0.633402

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-262, - strand, RNAz p=0.633402

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-278, gnl|bosTau2|chrX (38725528-38725795)
               

               
               1-278, gnl|Hg17|chrX (21692492-21692124)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-278, gnl|bosTau2|chrX (38725528-38725795)
               

               
               1-278, gnl|Hg17|chrX (21692492-21692124)

	1-278, gnl\|bosTau2\|chrX (38725528-38725795)
	1-278, gnl\|Hg17\|chrX (21692492-21692124)