Tra1-TCH01C050098
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| aacccacgcctccgccacaaccccagccagtgcagtcgaattcttaacccactgctccac agcaggaactccTATACAGCATCTTTTAACCACAGAGGGAATCCATGATGGTGGAACTGC CACCAATGATGCTATCTTTAGCTTAAGCACAGGTTGAAGGGTCTTCTGAACCAAAGGACA CAGGAAGGTTTGTGACACCTCCTCTCACTCCCTCAAAGCCTTCATAGAGCAAGAAAGGGT GAAGAGCTTATCTCCCATCAGACAAACTGCTTCAGAATAGTGCCAGTTTAAATCTGTACT GTTGATTCCACAAGAGGAGCCTGTAATCATGACTGATTATGAGGTTTCCTTCTCTGAACC CAATAAAAAATTACAATTCGCCAAGTCTCCCTTTATCTCCGTCATTTGTGTGTTCAATTA GTGCACTTGGACATCGATGCTTTGCTGGGAATGACAGGGTGGCCAGCAAACCCTCGGACA TGGGGATGGAATATTGACTGACATGCATCTCGTTGGTTCTCCTGCCTGGAAATTTCTATT CCCCGAGTCTCTGGTAACAGTTTGAGGTTGGTATTAAAAACCCCTTGTTTGTTGTAGGTG CAAACATCGCCAGAAGGAGCATTTGAGCTATAAAAAAGGAGAGTTAAGCTAAAGCCCCTA AACTTGTGGTGAGGAATTATTTCTTATTTCCTCTAAACTTGGAGAGTCATTAGAGAATAA GATCATGGGGTATCCAGAAAATTAAATCCTTGTTAGAGAAGGGAACATTCATTTATGAAA TATCGAGGGGTGATAATAATGCTTATAAAAGCTAATGCTCTGTGGGATACACACCGTGAC TGCCATGAGAGTCTAAACCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| aacccacgcctccgccacaaccccagccagtgcagtcgaattcttaacccactgctccac agcaggaactccTATACAGCATCTTTTAACCACAGAGGGAATCCATGATGGTGGAACTGC CACCAATGATGCTATCTTTAGCTTAAGCACAGGTTGAAGGGTCTTCTGAACCAAAGGACA CAGGAAGGTTTGTGACACCTCCTCTCACTCCCTCAAAGCCTTCATAGAGCAAGAAAGGGT GAAGAGCTTATCTCCCATCAGACAAACTGCTTCAGAATAGTGCCAGTTTAAATCTGTACT GTTGATTCCACAAGAGGAGCCTGTAATCATGACTGATTATGAGGTTTCCTTCTCTGAACC CAATAAAAAATTACAATTCGCCAAGTCTCCCTTTATCTCCGTCATTTGTGTGTTCAATTA GTGCACTTGGACATCGATGCTTTGCTGGGAATGACAGGGTGGCCAGCAAACCCTCGGACA TGGGGATGGAATATTGACTGACATGCATCTCGTTGGTTCTCCTGCCTGGAAATTTCTATT CCCCGAGTCTCTGGTAACAGTTTGAGGTTGGTATTAAAAACCCCTTGTTTGTTGTAGGTG CAAACATCGCCAGAAGGAGCATTTGAGCTATAAAAAAGGAGAGTTAAGCTAAAGCCCCTA AACTTGTGGTGAGGAATTATTTCTTATTTCCTCTAAACTTGGAGAGTCATTAGAGAATAA GATCATGGGGTATCCAGAAAATTAAATCCTTGTTAGAGAAGGGAACATTCATTTATGAAA TATCGAGGGGTGATAATAATGCTTATAAAAGCTAATGCTCTGTGGGATACACACCGTGAC TGCCATGAGAGTCTAAACCCA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 410-548, + strand, RNAz p=0.967467 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 410-548, + strand, RNAz p=0.967467 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 290-625, gnl|bosTau2|chr15 (40745249-40744893) | |
| 290-625, gnl|canFam2|chr18 (34942905-34941870) | |
| 290-625, gnl|dasNov1|scaffold_764 (93108-94251) | |
| 290-625, gnl|echTel1|scaffold_320852 (174895-173898) | |
| 290-625, gnl|hg17|chr11 (36183780-36184840) | |
| 290-625, gnl|Hg17|chr11 (36183779-36184176) | |
| 290-625, gnl|mm7|chr2 (101821281-101820157) | |
| 290-625, gnl|Mm7|chr2 (101821283-101820901) | |
| 290-625, gnl|oryCun1|scaffold_214500 (203828-204838) | |
| 290-625, gnl|panTro1|chr9 (36617196-36618257) | |
| 290-625, gnl|rheMac2|chr14 (35626843-35625791) | |
| 290-625, gnl|rn3|chr3 (87024908-87023861) | |
| 660-861, gnl|bosTau2|chr15 (40744901-40744695) | |
| 660-861, gnl|canFam2|chr18 (34942905-34941870) | |
| 660-861, gnl|dasNov1|scaffold_764 (93108-94251) | |
| 660-861, gnl|echTel1|scaffold_320852 (174895-173898) | |
| 660-861, gnl|hg17|chr11 (36183780-36184840) | |
| 660-861, gnl|Hg17|chr11 (36184124-36184373) | |
| 660-861, gnl|mm7|chr2 (101821281-101820157) | |
| 660-861, gnl|Mm7|chr2 (101820923-101820707) | |
| 660-861, gnl|oryCun1|scaffold_214500 (203828-204838) | |
| 660-861, gnl|panTro1|chr9 (36617196-36618257) | |
| 660-861, gnl|rheMac2|chr14 (35626843-35625791) | |
| 660-861, gnl|rn3|chr3 (87024908-87023861) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 290-625, gnl|bosTau2|chr15 (40745249-40744893) | |
| 290-625, gnl|canFam2|chr18 (34942905-34941870) | |
| 290-625, gnl|dasNov1|scaffold_764 (93108-94251) | |
| 290-625, gnl|echTel1|scaffold_320852 (174895-173898) | |
| 290-625, gnl|hg17|chr11 (36183780-36184840) | |
| 290-625, gnl|Hg17|chr11 (36183779-36184176) | |
| 290-625, gnl|mm7|chr2 (101821281-101820157) | |
| 290-625, gnl|Mm7|chr2 (101821283-101820901) | |
| 290-625, gnl|oryCun1|scaffold_214500 (203828-204838) | |
| 290-625, gnl|panTro1|chr9 (36617196-36618257) | |
| 290-625, gnl|rheMac2|chr14 (35626843-35625791) | |
| 290-625, gnl|rn3|chr3 (87024908-87023861) | |
| 660-861, gnl|bosTau2|chr15 (40744901-40744695) | |
| 660-861, gnl|canFam2|chr18 (34942905-34941870) | |
| 660-861, gnl|dasNov1|scaffold_764 (93108-94251) | |
| 660-861, gnl|echTel1|scaffold_320852 (174895-173898) | |
| 660-861, gnl|hg17|chr11 (36183780-36184840) | |
| 660-861, gnl|Hg17|chr11 (36184124-36184373) | |
| 660-861, gnl|mm7|chr2 (101821281-101820157) | |
| 660-861, gnl|Mm7|chr2 (101820923-101820707) | |
| 660-861, gnl|oryCun1|scaffold_214500 (203828-204838) | |
| 660-861, gnl|panTro1|chr9 (36617196-36618257) | |
| 660-861, gnl|rheMac2|chr14 (35626843-35625791) | |
| 660-861, gnl|rn3|chr3 (87024908-87023861) |