Non-Coding RNA Search

Tra1-TCH01C090013

Sequence:


               
               TTGTTCTCTTCCAGCATTCCCTGGTTTTTGGAGTATAGATTTCTCCATAGGCATCTGAGA
GAATGCGTTTGAGTATGTGGAGCCCGAGTCCCTGAGCGCTGGGGGCCTCTGTGAACGTGC
TGGGCCCTGGTAGATGCTGGGGGACACCAGGCATATCTCCGTGTCCCTCCAGCTCCACCT
TCTTGAGTCGCCATCACAGACGAACTTGGAATTGTTTAAGGGGTGTAAACAAGTACACTT
Gctttttagggccgcacttgccacatatggaggttcccaggctgggggtcaaatcggagc
tgccgctgccggcctacgccagagccacagcagcgcaggttcccagtcacatctgcgaca
tacaccgcatctcacggcaatgccagatccttaacccactgagcggggccagggatcaaa
cctgcaacctcagggttgctagttgcattcgtttctgctgcgccataacaggaactTCGT
ATCTTGACTTTTTGATCTTGGGTCTTTTACTTCTTGAAGATAGAAGTTATGCTTTTCAAA
TGTTTCATGAGTAATGAACAGATATCTTCTAAATTGTGTCACATGTTTAGGTATCTTTGA
AGATAAGTTTATATTGAAGAGTCAGCAAAAGAAAACATGAGAACCAAGGCCAGAGTTCAT
CAGGCTGTGTGTGCACTGTGTGCACGCAGTCTTTAATGAAAGCTCCAGACCAGCCTGATG
ATGTGACCAAATTTACAGGGGAAGAAGAAAGAAAACAAACCAACAAAAACCAACCCTAGC
TTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTCTCTTCCAGCATTCCCTGGTTTTTGGAGTATAGATTTCTCCATAGGCATCTGAGA
GAATGCGTTTGAGTATGTGGAGCCCGAGTCCCTGAGCGCTGGGGGCCTCTGTGAACGTGC
TGGGCCCTGGTAGATGCTGGGGGACACCAGGCATATCTCCGTGTCCCTCCAGCTCCACCT
TCTTGAGTCGCCATCACAGACGAACTTGGAATTGTTTAAGGGGTGTAAACAAGTACACTT
Gctttttagggccgcacttgccacatatggaggttcccaggctgggggtcaaatcggagc
tgccgctgccggcctacgccagagccacagcagcgcaggttcccagtcacatctgcgaca
tacaccgcatctcacggcaatgccagatccttaacccactgagcggggccagggatcaaa
cctgcaacctcagggttgctagttgcattcgtttctgctgcgccataacaggaactTCGT
ATCTTGACTTTTTGATCTTGGGTCTTTTACTTCTTGAAGATAGAAGTTATGCTTTTCAAA
TGTTTCATGAGTAATGAACAGATATCTTCTAAATTGTGTCACATGTTTAGGTATCTTTGA
AGATAAGTTTATATTGAAGAGTCAGCAAAAGAAAACATGAGAACCAAGGCCAGAGTTCAT
CAGGCTGTGTGTGCACTGTGTGCACGCAGTCTTTAATGAAAGCTCCAGACCAGCCTGATG
ATGTGACCAAATTTACAGGGGAAGAAGAAAGAAAACAAACCAACAAAAACCAACCCTAGC
TTCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               634-750, + strand, RNAz p=0.974957

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               634-750, + strand, RNAz p=0.974957

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               480-750, gnl|bosTau2|chr14 (15012425-15012154)
               

               
               480-750, gnl|Hg17|chr8 (61821725-61822000)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               480-750, gnl|bosTau2|chr14 (15012425-15012154)
               

               
               480-750, gnl|Hg17|chr8 (61821725-61822000)

	480-750, gnl\|bosTau2\|chr14 (15012425-15012154)
	480-750, gnl\|Hg17\|chr8 (61821725-61822000)