Non-Coding RNA Search

Tra1-TCH01C100039

Sequence:


               
               GACTTCCCGTGTGGCTCACAACATAACTACTCGGCGTTGCttcccaggctaggggtcgaa
tcggagctacagctgccggcctacaccacagtcacagcaacatcagatctgggccatatc
tgtgacctaccctgcaggtcatggcaatgctggatccttaacctactgagcgaggccagg
gatcgaacctacaacctcatggttcccagttggattcatttccactgcatgacaatggga
actccCTATGTTTTTGATGACCCGGCAGGTTTGTCCCAGGGAGAACTGGAGGTGAAGGTT
TCCTGGTGAGAACTGGGCCTCACTGTCCAGGGAACATACAGGAGTGTCCAAGTATAGAAA
TGGTTCTCTATGGTCTCTAGGTATGTCCCTAGAAAGTGGGAAGGTGTATTAAGGAAGCAT
AAGTATGGATCAGGAAGCCAACAGAAGGGTCCAGTGAAGAACTAGGTTGCTATGGGGATG
ATGGGTCTCTATCTCATGGTCCTATCTCCTCTGTTTTGAGCTTCTTCCAGGTCATGTCCC
TCTTCTGGTTGTTGGCTTTAGTGGACACCAGGGGGCAGTGTGCAGCCAGGCTGTAGGCCA
CACCCACCCAGGGTCCAGGACAATGTAGGATGAGGGCCAAGGACCTGGAGGGGAAGTCCT
GGGGTGAGTCTAAAAGAAGCCCCCACTGCCTTTGTCCTCAATCCTGAGGTCCTTAGGGAG
GGACTCTTGTTGGTCATGTCAGGGCTCCAACTCCCAGGCCCTGGAAATCAACTGAGCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTTCCCGTGTGGCTCACAACATAACTACTCGGCGTTGCttcccaggctaggggtcgaa
tcggagctacagctgccggcctacaccacagtcacagcaacatcagatctgggccatatc
tgtgacctaccctgcaggtcatggcaatgctggatccttaacctactgagcgaggccagg
gatcgaacctacaacctcatggttcccagttggattcatttccactgcatgacaatggga
actccCTATGTTTTTGATGACCCGGCAGGTTTGTCCCAGGGAGAACTGGAGGTGAAGGTT
TCCTGGTGAGAACTGGGCCTCACTGTCCAGGGAACATACAGGAGTGTCCAAGTATAGAAA
TGGTTCTCTATGGTCTCTAGGTATGTCCCTAGAAAGTGGGAAGGTGTATTAAGGAAGCAT
AAGTATGGATCAGGAAGCCAACAGAAGGGTCCAGTGAAGAACTAGGTTGCTATGGGGATG
ATGGGTCTCTATCTCATGGTCCTATCTCCTCTGTTTTGAGCTTCTTCCAGGTCATGTCCC
TCTTCTGGTTGTTGGCTTTAGTGGACACCAGGGGGCAGTGTGCAGCCAGGCTGTAGGCCA
CACCCACCCAGGGTCCAGGACAATGTAGGATGAGGGCCAAGGACCTGGAGGGGAAGTCCT
GGGGTGAGTCTAAAAGAAGCCCCCACTGCCTTTGTCCTCAATCCTGAGGTCCTTAGGGAG
GGACTCTTGTTGGTCATGTCAGGGCTCCAACTCCCAGGCCCTGGAAATCAACTGAGCCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               554-780, - strand, RNAz p=0.787926

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               554-780, - strand, RNAz p=0.787926

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               248-780, gnl|bosTau2|chr19 (38964647-38965164)
               

               
               248-780, gnl|Hg17|chr17 (38170118-38168952)
               

               
               248-780, gnl|Mm7|chr11 (101358349-101357639)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               248-780, gnl|bosTau2|chr19 (38964647-38965164)
               

               
               248-780, gnl|Hg17|chr17 (38170118-38168952)
               

               
               248-780, gnl|Mm7|chr11 (101358349-101357639)

	248-780, gnl\|bosTau2\|chr19 (38964647-38965164)
	248-780, gnl\|Hg17\|chr17 (38170118-38168952)
	248-780, gnl\|Mm7\|chr11 (101358349-101357639)