Non-Coding RNA Search

Tra1-TCH01C110095

Sequence:


               
               TCTGAATAGACTGATATTTGTCAGTTCCCTCCTTCTTTGGGACAGACAGTCCCTTCCCCT
CATGGAAGGGTCAGAGCAGAGCGTGTTCCCCTCTCCCCTCAGAGGCAGATTTCTCCCTGT
CATTAGCAACAGGTGGGCAGACACTCCCCCTTTCCAGTACCCACAAGGTGATGGTACCTC
ATCTTCAGAATAGACTGTCTTTGTGGATGGTGTGGAAACATGCACCTCCTCTCCAAACAC
AGACTGGGGTTGGGGGGGCAGCAGCAGGAGACAGCAGGGTCCAGGCTCTTAGCACACCCA
GATCCCCTGTACCCAGGCACCCAGCTGGCAGGCAGAGAAATGTGGGGCAGGGAAGCAGCA
CCTTCCCTTTAAGTGGGGTAAATTGAGCAGCCACATAGAACTCCTTGAGCCTAGTCCTCA
CAGAGATCATATGTATGGGTTGGTGATCCCTTTAGGAAGGATGGACTCTTGATCCCACTC
CCATCCTCCTGTCCTGTCACATGAGACCAATGTTGTGCACAAAATTGACAAATCTCCCTT
GCGATGGGCCTCCTCTTCAACAGAGAGCCCCATACAATCACTTGTGGGAGCCCACAGGAC
TCAGCCATGACCCTACTCCAGAGGGTCCTTCCTCCCCTTCTCTCACCATTTGTGACTGCC
CAAGCTTCTCCAGCCTCTGTTATGACTTATGGAAGGGCCTTGATCATGTGTAAGATTTCA
ACCCCACACAAACAGTCCCATAAAGGTCACTTCTGGGATTTTTCCCTAGTCCAAATCCTC
ATATTCAGCAGGCCTCTTTCTCATTTGGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGAATAGACTGATATTTGTCAGTTCCCTCCTTCTTTGGGACAGACAGTCCCTTCCCCT
CATGGAAGGGTCAGAGCAGAGCGTGTTCCCCTCTCCCCTCAGAGGCAGATTTCTCCCTGT
CATTAGCAACAGGTGGGCAGACACTCCCCCTTTCCAGTACCCACAAGGTGATGGTACCTC
ATCTTCAGAATAGACTGTCTTTGTGGATGGTGTGGAAACATGCACCTCCTCTCCAAACAC
AGACTGGGGTTGGGGGGGCAGCAGCAGGAGACAGCAGGGTCCAGGCTCTTAGCACACCCA
GATCCCCTGTACCCAGGCACCCAGCTGGCAGGCAGAGAAATGTGGGGCAGGGAAGCAGCA
CCTTCCCTTTAAGTGGGGTAAATTGAGCAGCCACATAGAACTCCTTGAGCCTAGTCCTCA
CAGAGATCATATGTATGGGTTGGTGATCCCTTTAGGAAGGATGGACTCTTGATCCCACTC
CCATCCTCCTGTCCTGTCACATGAGACCAATGTTGTGCACAAAATTGACAAATCTCCCTT
GCGATGGGCCTCCTCTTCAACAGAGAGCCCCATACAATCACTTGTGGGAGCCCACAGGAC
TCAGCCATGACCCTACTCCAGAGGGTCCTTCCTCCCCTTCTCTCACCATTTGTGACTGCC
CAAGCTTCTCCAGCCTCTGTTATGACTTATGGAAGGGCCTTGATCATGTGTAAGATTTCA
ACCCCACACAAACAGTCCCATAAAGGTCACTTCTGGGATTTTTCCCTAGTCCAAATCCTC
ATATTCAGCAGGCCTCTTTCTCATTTGGAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-111, - strand, RNAz p=0.800184
               

               
               374-482, - strand, RNAz p=0.964732

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-111, - strand, RNAz p=0.800184
               

               
               374-482, - strand, RNAz p=0.964732

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-199, gnl|bosTau2|chr17 (42533047-42532855)
               

               
               1-199, gnl|canFam2|chr26 (26507163-26507369)
               

               
               1-199, gnl|echTel1|scaffold_308250 (9823-9733)
               

               
               1-199, gnl|fr1|chrUn (244943059-244942877)
               

               
               1-199, gnl|hg17|chr22 (29046439-29046649)
               

               
               1-199, gnl|Hg17|chr22 (29046651-29046446)
               

               
               1-199, gnl|loxAfr1|scaffold_39117 (2967-3141)
               

               
               1-199, gnl|mm7|chr11 (4139746-4139545)
               

               
               1-199, gnl|Mm7|chr11 (4139542-4139780)
               

               
               1-199, gnl|panTro1|chr23 (29141278-29141490)
               

               
               1-199, gnl|rheMac2|chr10 (74178145-74178355)
               

               
               1-199, gnl|rn3|chr14 (84830267-84830041)
               


               
               266-809, gnl|bosTau2|chr17 (42532817-42532259)
               

               
               266-809, gnl|Hg17|chr22 (29046341-29045826)
               

               
               266-809, gnl|Mm7|chr11 (4139829-4140339)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-199, gnl|bosTau2|chr17 (42533047-42532855)
               

               
               1-199, gnl|canFam2|chr26 (26507163-26507369)
               

               
               1-199, gnl|echTel1|scaffold_308250 (9823-9733)
               

               
               1-199, gnl|fr1|chrUn (244943059-244942877)
               

               
               1-199, gnl|hg17|chr22 (29046439-29046649)
               

               
               1-199, gnl|Hg17|chr22 (29046651-29046446)
               

               
               1-199, gnl|loxAfr1|scaffold_39117 (2967-3141)
               

               
               1-199, gnl|mm7|chr11 (4139746-4139545)
               

               
               1-199, gnl|Mm7|chr11 (4139542-4139780)
               

               
               1-199, gnl|panTro1|chr23 (29141278-29141490)
               

               
               1-199, gnl|rheMac2|chr10 (74178145-74178355)
               

               
               1-199, gnl|rn3|chr14 (84830267-84830041)
               


               
               266-809, gnl|bosTau2|chr17 (42532817-42532259)
               

               
               266-809, gnl|Hg17|chr22 (29046341-29045826)
               

               
               266-809, gnl|Mm7|chr11 (4139829-4140339)

	1-111, - strand, RNAz p=0.800184
	374-482, - strand, RNAz p=0.964732

	1-199, gnl\|bosTau2\|chr17 (42533047-42532855)
	1-199, gnl\|canFam2\|chr26 (26507163-26507369)
	1-199, gnl\|echTel1\|scaffold_308250 (9823-9733)
	1-199, gnl\|fr1\|chrUn (244943059-244942877)
	1-199, gnl\|hg17\|chr22 (29046439-29046649)
	1-199, gnl\|Hg17\|chr22 (29046651-29046446)
	1-199, gnl\|loxAfr1\|scaffold_39117 (2967-3141)
	1-199, gnl\|mm7\|chr11 (4139746-4139545)
	1-199, gnl\|Mm7\|chr11 (4139542-4139780)
	1-199, gnl\|panTro1\|chr23 (29141278-29141490)
	1-199, gnl\|rheMac2\|chr10 (74178145-74178355)
	1-199, gnl\|rn3\|chr14 (84830267-84830041)

	266-809, gnl\|bosTau2\|chr17 (42532817-42532259)
	266-809, gnl\|Hg17\|chr22 (29046341-29045826)
	266-809, gnl\|Mm7\|chr11 (4139829-4140339)