Non-Coding RNA Search

Tra1-TCH01C120001

Sequence:


               
               AGAAAACTGCCTCACCTATTTGCACAGAAACAGTGTAATGTGATTTACAGTGCAGGCCAT
GTGTGACTCTTGGATGGGGGACCTTGGGCAAGATTTAACCTCTCTGTGGTTTAGTTTTCT
ATTCTTCAAAATGGGGGATAAAATAGTCTCTATCTCATAGGGTTATCGTGAAGATGAAAC
AAGAAATTCACATAAGGCACTTGAGAAACTATTTAGCAGGTAATAAACATTCAACAAGTA
TTGTCCATTATTATTTCCAAGTTTCCTCCCAGCACACGTCTCATGACCCTTTGTTCAGGA
CTGGCATATGCTCTCCACTTTTACCCTACACCTTCTAGTGAGCAGGCCCTGACATTTATC
CAGGGTCCTGATTAGCAATTTTTATCCTTAGTCACTGGCTTCTGAAATCGGATCATTGGA
AGGCTGCTACATACAGAGCAAGCTCACAATAAATGTTGCTGAGTAGAATTTGCCAATCAC
CACCAGTCTGAACTACAGTTGGATGTTGTTTATGCCTCTCCCAATGCAGCTGAAAAGATT
GAGCGAGAGAGAAGCCTGATCCAGGAATACATAGCTCAACACAGAGTGGTGGAGAGTGAA
ATACTGGGTACCAGGAGACCCCTAGTCATTTCACACCTCAGCCCCCAGGATGAGGGCAAG
CGGCTGACACCTCTCAGGGAGGGTGTATTGGAGGGTCTTTCTCTGGAGAAACTGAGCAAC
CTAACATAAAAGATCGACAGGTACTCACAGGTGGGATCCCCAGTGACATGACAGCATAAT
CACCCTACAGTGAAGCCCATCAGTTGATAAGCTTCTTGTCTTTTTGGTTTCACACTCTTA
AATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAACTGCCTCACCTATTTGCACAGAAACAGTGTAATGTGATTTACAGTGCAGGCCAT
GTGTGACTCTTGGATGGGGGACCTTGGGCAAGATTTAACCTCTCTGTGGTTTAGTTTTCT
ATTCTTCAAAATGGGGGATAAAATAGTCTCTATCTCATAGGGTTATCGTGAAGATGAAAC
AAGAAATTCACATAAGGCACTTGAGAAACTATTTAGCAGGTAATAAACATTCAACAAGTA
TTGTCCATTATTATTTCCAAGTTTCCTCCCAGCACACGTCTCATGACCCTTTGTTCAGGA
CTGGCATATGCTCTCCACTTTTACCCTACACCTTCTAGTGAGCAGGCCCTGACATTTATC
CAGGGTCCTGATTAGCAATTTTTATCCTTAGTCACTGGCTTCTGAAATCGGATCATTGGA
AGGCTGCTACATACAGAGCAAGCTCACAATAAATGTTGCTGAGTAGAATTTGCCAATCAC
CACCAGTCTGAACTACAGTTGGATGTTGTTTATGCCTCTCCCAATGCAGCTGAAAAGATT
GAGCGAGAGAGAAGCCTGATCCAGGAATACATAGCTCAACACAGAGTGGTGGAGAGTGAA
ATACTGGGTACCAGGAGACCCCTAGTCATTTCACACCTCAGCCCCCAGGATGAGGGCAAG
CGGCTGACACCTCTCAGGGAGGGTGTATTGGAGGGTCTTTCTCTGGAGAAACTGAGCAAC
CTAACATAAAAGATCGACAGGTACTCACAGGTGGGATCCCCAGTGACATGACAGCATAAT
CACCCTACAGTGAAGCCCATCAGTTGATAAGCTTCTTGTCTTTTTGGTTTCACACTCTTA
AATGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               513-707, - strand, RNAz p=0.952499

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               513-707, - strand, RNAz p=0.952499

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-818, gnl|bosTau2|chr1 (80860633-80859808)
               

               
               3-818, gnl|Hg17|chr3 (143000811-143001869)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-818, gnl|bosTau2|chr1 (80860633-80859808)
               

               
               3-818, gnl|Hg17|chr3 (143000811-143001869)

	3-818, gnl\|bosTau2\|chr1 (80860633-80859808)
	3-818, gnl\|Hg17\|chr3 (143000811-143001869)