Non-Coding RNA Search

Tra1-TCH01D010009

Sequence:


               
               GACGTTAGTTATCATGGTTGTTGTTTATATTCATGTATGTTTTCACCCACGGTATTTTCA
CTGATTCTAATTAGAAACCTCTGGGGTATGTGAGTTTATGTCACTTAATTACAAATGCCT
CCCTACTTGACTAATACTAGCACAGATGGTCAGAGAGGTTTGATGATTTGCTGAAGGTCA
TGCAGATAGTAACACGGGTTGGGGCTGAGACTTGAGCCCAGGTGTCATAGTTCAAACCTC
CCTGGTTCAGGAATCTCTGTTGCCCTTTGCTGCCTGTGGTGCTACCGGACTCTACTGTGT
TATGAAGACCCAAGCTGGAATTCGGGGAGTTAGAGGAATCACCCATGAGAATAGGTTCTC
AGGACCAATCATAAACTTTTCTGCCCCTTGTGTGTAGAAAACAGAATTATCAAGGCTTTC
GACCAATGGGTCACACCCTGGCCAGGAAATCTGTGATAAGCTTTTCCTGTGCTGCTTGGT
AACGCCCGGGTTTAATGTGGCAGGATTTCCCAAAGCTTTGGCAGAACTTGGTTCTCCAAC
TGGATGAGGGCGAGTCCTTTTGTCCTAAGACAAAAGCTTTTCTGAACAGTAAGAATCACT
CAGAGAGGAAATATCCTTGAGCATCTCCTGTATTCAAGCTCGGTGCTGACCATCTAGAAG
CATTCCAAAAATGCCTGTGCCGGATCTTGTGCTCAGTGAAAGAGGCGGTCTATTCTGATG
TCAAATCTTAGATTCTCGTCCCAGCTTTGGCACCTGCCAGTGCCACCTCAGTTTCCGTAT
CCATCATCCAACATAAAGCACTCCCTGCAGTGCATGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGTTAGTTATCATGGTTGTTGTTTATATTCATGTATGTTTTCACCCACGGTATTTTCA
CTGATTCTAATTAGAAACCTCTGGGGTATGTGAGTTTATGTCACTTAATTACAAATGCCT
CCCTACTTGACTAATACTAGCACAGATGGTCAGAGAGGTTTGATGATTTGCTGAAGGTCA
TGCAGATAGTAACACGGGTTGGGGCTGAGACTTGAGCCCAGGTGTCATAGTTCAAACCTC
CCTGGTTCAGGAATCTCTGTTGCCCTTTGCTGCCTGTGGTGCTACCGGACTCTACTGTGT
TATGAAGACCCAAGCTGGAATTCGGGGAGTTAGAGGAATCACCCATGAGAATAGGTTCTC
AGGACCAATCATAAACTTTTCTGCCCCTTGTGTGTAGAAAACAGAATTATCAAGGCTTTC
GACCAATGGGTCACACCCTGGCCAGGAAATCTGTGATAAGCTTTTCCTGTGCTGCTTGGT
AACGCCCGGGTTTAATGTGGCAGGATTTCCCAAAGCTTTGGCAGAACTTGGTTCTCCAAC
TGGATGAGGGCGAGTCCTTTTGTCCTAAGACAAAAGCTTTTCTGAACAGTAAGAATCACT
CAGAGAGGAAATATCCTTGAGCATCTCCTGTATTCAAGCTCGGTGCTGACCATCTAGAAG
CATTCCAAAAATGCCTGTGCCGGATCTTGTGCTCAGTGAAAGAGGCGGTCTATTCTGATG
TCAAATCTTAGATTCTCGTCCCAGCTTTGGCACCTGCCAGTGCCACCTCAGTTTCCGTAT
CCATCATCCAACATAAAGCACTCCCTGCAGTGCATGGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               149-291, - strand, RNAz p=0.882652

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               149-291, - strand, RNAz p=0.882652

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               4-702, gnl|bosTau2|chr10 (35969998-35969285)
               

               
               4-702, gnl|canFam2|chr30 (28742261-28742859)
               

               
               4-702, gnl|dasNov1|scaffold_15 (212375-211790)
               

               
               4-702, gnl|echTel1|scaffold_319410 (92019-91318)
               

               
               4-702, gnl|hg17|chr15 (59016679-59017266)
               

               
               4-702, gnl|Hg17|chr15 (59017414-59016715)
               

               
               4-702, gnl|loxAfr1|scaffold_12099 (7405-7998)
               

               
               4-702, gnl|mm7|chr9 (68971020-68970470)
               

               
               4-702, gnl|Mm7|chr9 (68970331-68971032)
               

               
               4-702, gnl|oryCun1|scaffold_209524 (443628-444194)
               

               
               4-702, gnl|panTro1|chr16 (59444036-59444625)
               

               
               4-702, gnl|rheMac2|chr7 (39361202-39361790)
               

               
               4-702, gnl|rn3|chr8 (73387125-73386701)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-702, gnl|bosTau2|chr10 (35969998-35969285)
               

               
               4-702, gnl|canFam2|chr30 (28742261-28742859)
               

               
               4-702, gnl|dasNov1|scaffold_15 (212375-211790)
               

               
               4-702, gnl|echTel1|scaffold_319410 (92019-91318)
               

               
               4-702, gnl|hg17|chr15 (59016679-59017266)
               

               
               4-702, gnl|Hg17|chr15 (59017414-59016715)
               

               
               4-702, gnl|loxAfr1|scaffold_12099 (7405-7998)
               

               
               4-702, gnl|mm7|chr9 (68971020-68970470)
               

               
               4-702, gnl|Mm7|chr9 (68970331-68971032)
               

               
               4-702, gnl|oryCun1|scaffold_209524 (443628-444194)
               

               
               4-702, gnl|panTro1|chr16 (59444036-59444625)
               

               
               4-702, gnl|rheMac2|chr7 (39361202-39361790)
               

               
               4-702, gnl|rn3|chr8 (73387125-73386701)

	4-702, gnl\|bosTau2\|chr10 (35969998-35969285)
	4-702, gnl\|canFam2\|chr30 (28742261-28742859)
	4-702, gnl\|dasNov1\|scaffold_15 (212375-211790)
	4-702, gnl\|echTel1\|scaffold_319410 (92019-91318)
	4-702, gnl\|hg17\|chr15 (59016679-59017266)
	4-702, gnl\|Hg17\|chr15 (59017414-59016715)
	4-702, gnl\|loxAfr1\|scaffold_12099 (7405-7998)
	4-702, gnl\|mm7\|chr9 (68971020-68970470)
	4-702, gnl\|Mm7\|chr9 (68970331-68971032)
	4-702, gnl\|oryCun1\|scaffold_209524 (443628-444194)
	4-702, gnl\|panTro1\|chr16 (59444036-59444625)
	4-702, gnl\|rheMac2\|chr7 (39361202-39361790)
	4-702, gnl\|rn3\|chr8 (73387125-73386701)