Non-Coding RNA Search

Tra1-TCH01D010034

Sequence:


               
               AGAACACAAGAGGATGTTCTGGAGCGCCTGGCTTATGCTGAGCAGTTGGTGGTAGAACTA
AAAGAAATCATTAGACAGAAGGATGCTCAACTGCAGCAGAAGGATGAAGTTCTGCAGGAA
GAAAGAAAAGCTGCTGATAACAAAATAAAAAAACTAAAACTTCACGCCAAGGCCAAATTA
ACATCTTTGAACAAACACATAGAAGAGATGAAGGCACAAGGAGGGTCAGTTGTATCTGCA
GAATCTCAGTCAGAGGAGCAACTTTCTAAGCATGACAAGAGTTCTACAGAAGAAGAGATG
GAAGTAGAAAAGATAAAACATAAACTCCAGGAGAAGGAGGCACTAATTTGCAGTTTGCAA
GCCCAACTTACCCAGGCACAGGCAGAGCAGTCTACAAAGAGTTCAGCAGAGATGGAAGAA
TTTTTCACGATGAAGAAGCAGCTCCAAGAGAAGGAGGAACTTATTAGCACCTTGCAGACC
CAGCTCAGCCAGACGCAAGCAGAGCAAGCTGCTCAGGTAGGTGGAAGTTACCTTACAACA
ATTAGAATAAAGAATCATGAAAGCCTAAGGTTATTACATGACAAGTCAGTTCAGATAATC
TATTTTTAAAACTTGAGTAGATGAAAGTATAATAGCTGGAATGATACAGTAGAAATTAGA
AGGGTGTGGTAGTAGAAGAAATTAAAAGTGTTTATGTACCTTGATGATACACCATAGCCT
AACTGATGGCTGTTCCTTAGTTCTGCGGGCCCAGCAACTTCATTTTAATAGTACACAAAG
ACTCAGTCTTTTAGGGAGGAATGGGTTATGCCCAGTTCAAAAGAGACCGTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACACAAGAGGATGTTCTGGAGCGCCTGGCTTATGCTGAGCAGTTGGTGGTAGAACTA
AAAGAAATCATTAGACAGAAGGATGCTCAACTGCAGCAGAAGGATGAAGTTCTGCAGGAA
GAAAGAAAAGCTGCTGATAACAAAATAAAAAAACTAAAACTTCACGCCAAGGCCAAATTA
ACATCTTTGAACAAACACATAGAAGAGATGAAGGCACAAGGAGGGTCAGTTGTATCTGCA
GAATCTCAGTCAGAGGAGCAACTTTCTAAGCATGACAAGAGTTCTACAGAAGAAGAGATG
GAAGTAGAAAAGATAAAACATAAACTCCAGGAGAAGGAGGCACTAATTTGCAGTTTGCAA
GCCCAACTTACCCAGGCACAGGCAGAGCAGTCTACAAAGAGTTCAGCAGAGATGGAAGAA
TTTTTCACGATGAAGAAGCAGCTCCAAGAGAAGGAGGAACTTATTAGCACCTTGCAGACC
CAGCTCAGCCAGACGCAAGCAGAGCAAGCTGCTCAGGTAGGTGGAAGTTACCTTACAACA
ATTAGAATAAAGAATCATGAAAGCCTAAGGTTATTACATGACAAGTCAGTTCAGATAATC
TATTTTTAAAACTTGAGTAGATGAAAGTATAATAGCTGGAATGATACAGTAGAAATTAGA
AGGGTGTGGTAGTAGAAGAAATTAAAAGTGTTTATGTACCTTGATGATACACCATAGCCT
AACTGATGGCTGTTCCTTAGTTCTGCGGGCCCAGCAACTTCATTTTAATAGTACACAAAG
ACTCAGTCTTTTAGGGAGGAATGGGTTATGCCCAGTTCAAAAGAGACCGTTAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61871408|ref|XP_596023.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61871408|ref|XP_596023.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               149-268, - strand, RNAz p=0.819167

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               149-268, - strand, RNAz p=0.819167

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               111-270, gnl|bosTau2|chr1 (40663766-40663606)
               

               
               111-270, gnl|Hg17|chr3 (122930885-122930725)
               

               
               111-270, gnl|Mm7|chr16 (36595928-36596085)
               


               
               560-833, gnl|bosTau2|chr1 (40658519-40658254)
               

               
               560-833, gnl|Hg17|chr3 (122923754-122923443)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-270, gnl|bosTau2|chr1 (40663766-40663606)
               

               
               111-270, gnl|Hg17|chr3 (122930885-122930725)
               

               
               111-270, gnl|Mm7|chr16 (36595928-36596085)
               


               
               560-833, gnl|bosTau2|chr1 (40658519-40658254)
               

               
               560-833, gnl|Hg17|chr3 (122923754-122923443)

	111-270, gnl\|bosTau2\|chr1 (40663766-40663606)
	111-270, gnl\|Hg17\|chr3 (122930885-122930725)
	111-270, gnl\|Mm7\|chr16 (36595928-36596085)

	560-833, gnl\|bosTau2\|chr1 (40658519-40658254)
	560-833, gnl\|Hg17\|chr3 (122923754-122923443)