Tra1-TCH01D040027
               |  | AGTGGCTTATTTGGAGAAAAGATAATCGTGTAATGGTAGGTACAAAATGATGCCTTTTGT
AAGAGGTATTGCCACTTACTTACACCAGAGACAAGAATACAGGGAAATAAATGTGAAGCA
CTGATGAAAGGGATGAGGATGGCTCACATTTCTCATAGTAAGTAATCTGGCTGTTGGGCT
TTTATTTGTACCAATAGTGCTAGCTAGTATTGTCATTTGTTTTGTCTGGATCTTCGGAAA
TCTAATCAAGGAGACAATAGTGTAAAAAAAAAAAAAAAATCAACAACACTTTTCCAAATT
GTTCTTAATTGCCAGAGTACAAAGTGAGCTAAATGCTGTGATGTTTCCAATTAAGGGACC
TGTTTTAAGCAAGCGCTATTAAATCTATCTTCCCCAATCTGATAAATAAGCAATCAAAGA
GCAGAGCAGATTAATTGAGAGCCATTAGTTCCAGATTCCTTATAACAGGTAATGTGAGCC
AACATTATTAATGTTTTTTGGCAAGTTTGGGCGTGGTAACTGTGTCTTGTATTTTCTGGT
CAGTCAAAAAAGGAAATTGATTACATGTTATCATATTGCTTAGGATTTTTCATACCCCAA
ACCATTTGCTTTCCAAAATCTCAAGTTATATGAAAAGGAGTTTAGACGGCTTCTAAATCA
AAGTTGCCCCTTTGAATCTAGAAGGTGGAAGTGAGTGAATTAAAAGAGAAACGTGTGTCA
TCCCTCTGATAGGAAGAAATACAGTTATGAACATGAGATTGTCTGTACTGGGTaggagtt
ggcaaagtttttctgtaggagacctgatagtaaatattttaggcaatgcgggccatccgg
tctGTCACACTCCTCACCTCTGGCAC | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | AGTGGCTTATTTGGAGAAAAGATAATCGTGTAATGGTAGGTACAAAATGATGCCTTTTGT
AAGAGGTATTGCCACTTACTTACACCAGAGACAAGAATACAGGGAAATAAATGTGAAGCA
CTGATGAAAGGGATGAGGATGGCTCACATTTCTCATAGTAAGTAATCTGGCTGTTGGGCT
TTTATTTGTACCAATAGTGCTAGCTAGTATTGTCATTTGTTTTGTCTGGATCTTCGGAAA
TCTAATCAAGGAGACAATAGTGTAAAAAAAAAAAAAAAATCAACAACACTTTTCCAAATT
GTTCTTAATTGCCAGAGTACAAAGTGAGCTAAATGCTGTGATGTTTCCAATTAAGGGACC
TGTTTTAAGCAAGCGCTATTAAATCTATCTTCCCCAATCTGATAAATAAGCAATCAAAGA
GCAGAGCAGATTAATTGAGAGCCATTAGTTCCAGATTCCTTATAACAGGTAATGTGAGCC
AACATTATTAATGTTTTTTGGCAAGTTTGGGCGTGGTAACTGTGTCTTGTATTTTCTGGT
CAGTCAAAAAAGGAAATTGATTACATGTTATCATATTGCTTAGGATTTTTCATACCCCAA
ACCATTTGCTTTCCAAAATCTCAAGTTATATGAAAAGGAGTTTAGACGGCTTCTAAATCA
AAGTTGCCCCTTTGAATCTAGAAGGTGGAAGTGAGTGAATTAAAAGAGAAACGTGTGTCA
TCCCTCTGATAGGAAGAAATACAGTTATGAACATGAGATTGTCTGTACTGGGTaggagtt
ggcaaagtttttctgtaggagacctgatagtaaatattttaggcaatgcgggccatccgg
tctGTCACACTCCTCACCTCTGGCAC | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map