Non-Coding RNA Search

Tra1-TCH01D040039

Sequence:


               
               TATTATACCTCTGGCCACCGATGGGCCCAAGGAAGCATCAGAAAAGTGGCTTGGAAACCT
CTTTTCATGGCATGTTATGGGCCGGCATTTCCACTTACACCTTTCTTTCCTGGGTAGATT
CTTCCTTTTCTGAAGCTAGCAGAGTTGTTCGTAGATCTTTTCACACACACGGGTGCTCCT
CTTGGGAGATGCTGGGTAAAATCTACCTTCCCCCTCCTTACCCTCCTGAAAGTCAAAGGA
ACTATTTTCATTGACCCTGCCCAATAAGGAACAGGCCTGGGAAACTTTCCAGGACCCTTC
CCCTTCAGCTCAGACCCCACAAACCTTTTTCTTCCAGCAGCTCCCTGTCCTGAAAGTGGA
GGCCCCCAAGAGAGGAGAAAGTGGCCTAGTCAGTACTGAGCACAGGTCTGCACCTCAAGA
CCATGGGTGAAAGAAGGTCATCTGTGTTTGACCCACTGGAGCCCAAAGGGCAAGACTTGA
GCCTCCTCCTCTCCACTGGGGCACACGTTCCAGGTTCTCCTTGGACATTGTGAGAGTCCC
TCAGTGATTCCTGGGGGCAAGTATGACTGTCTCCTCCTCCTCCAGGTCTTGATTTTCAAG
GACCTATTCTCTAGTGGAGAAGAGACGAAAGCAATTATTTACTTGATCCCCACAGCCTCA
CTGAAATCATGGAGGGTCCACTAGCTAGCAGGCCGTGTACTAGGCGCTGTGCATTCAGAG
ATGACCAAGACCTGGATCCTGTCTGCCACCACGGCGCTCGTGGTCTAAAACATGAATGTG
GCCTTTAGCAGCCCACATTTTCTTTTGATAAGACCTAGTCCTACCCTGAGTCCTTATGAA
CTTATATAAAGCCATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTATACCTCTGGCCACCGATGGGCCCAAGGAAGCATCAGAAAAGTGGCTTGGAAACCT
CTTTTCATGGCATGTTATGGGCCGGCATTTCCACTTACACCTTTCTTTCCTGGGTAGATT
CTTCCTTTTCTGAAGCTAGCAGAGTTGTTCGTAGATCTTTTCACACACACGGGTGCTCCT
CTTGGGAGATGCTGGGTAAAATCTACCTTCCCCCTCCTTACCCTCCTGAAAGTCAAAGGA
ACTATTTTCATTGACCCTGCCCAATAAGGAACAGGCCTGGGAAACTTTCCAGGACCCTTC
CCCTTCAGCTCAGACCCCACAAACCTTTTTCTTCCAGCAGCTCCCTGTCCTGAAAGTGGA
GGCCCCCAAGAGAGGAGAAAGTGGCCTAGTCAGTACTGAGCACAGGTCTGCACCTCAAGA
CCATGGGTGAAAGAAGGTCATCTGTGTTTGACCCACTGGAGCCCAAAGGGCAAGACTTGA
GCCTCCTCCTCTCCACTGGGGCACACGTTCCAGGTTCTCCTTGGACATTGTGAGAGTCCC
TCAGTGATTCCTGGGGGCAAGTATGACTGTCTCCTCCTCCTCCAGGTCTTGATTTTCAAG
GACCTATTCTCTAGTGGAGAAGAGACGAAAGCAATTATTTACTTGATCCCCACAGCCTCA
CTGAAATCATGGAGGGTCCACTAGCTAGCAGGCCGTGTACTAGGCGCTGTGCATTCAGAG
ATGACCAAGACCTGGATCCTGTCTGCCACCACGGCGCTCGTGGTCTAAAACATGAATGTG
GCCTTTAGCAGCCCACATTTTCTTTTGATAAGACCTAGTCCTACCCTGAGTCCTTATGAA
CTTATATAAAGCCATTG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               193-312, - strand, RNAz p=0.999742
               

               
               393-670, - strand, RNAz p=0.983082
               

               
               736-848, - strand, RNAz p=0.888806

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-312, - strand, RNAz p=0.999742
               

               
               393-670, - strand, RNAz p=0.983082
               

               
               736-848, - strand, RNAz p=0.888806

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               1-678, gnl|bosTau2|chr11 (58654357-58653683)
               

               
               1-678, gnl|Hg17|chr11 (43540696-43541292)
               


               
               728-848, gnl|bosTau2|chr11 (58653211-58653090)
               

               
               728-848, gnl|canFam2|chr18 (29191056-29190929)
               

               
               728-848, gnl|dasNov1|scaffold_4175 (68909-68775)
               

               
               728-848, gnl|hg17|chr11 (43541324-43541454)
               

               
               728-848, gnl|Hg17|chr11 (43541355-43541484)
               

               
               728-848, gnl|panTro1|chr9 (44037179-44037309)
               

               
               728-848, gnl|rheMac2|chr14 (28527466-28527336)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-678, gnl|bosTau2|chr11 (58654357-58653683)
               

               
               1-678, gnl|Hg17|chr11 (43540696-43541292)
               


               
               728-848, gnl|bosTau2|chr11 (58653211-58653090)
               

               
               728-848, gnl|canFam2|chr18 (29191056-29190929)
               

               
               728-848, gnl|dasNov1|scaffold_4175 (68909-68775)
               

               
               728-848, gnl|hg17|chr11 (43541324-43541454)
               

               
               728-848, gnl|Hg17|chr11 (43541355-43541484)
               

               
               728-848, gnl|panTro1|chr9 (44037179-44037309)
               

               
               728-848, gnl|rheMac2|chr14 (28527466-28527336)

	193-312, - strand, RNAz p=0.999742
	393-670, - strand, RNAz p=0.983082
	736-848, - strand, RNAz p=0.888806

	1-678, gnl\|bosTau2\|chr11 (58654357-58653683)
	1-678, gnl\|Hg17\|chr11 (43540696-43541292)

	728-848, gnl\|bosTau2\|chr11 (58653211-58653090)
	728-848, gnl\|canFam2\|chr18 (29191056-29190929)
	728-848, gnl\|dasNov1\|scaffold_4175 (68909-68775)
	728-848, gnl\|hg17\|chr11 (43541324-43541454)
	728-848, gnl\|Hg17\|chr11 (43541355-43541484)
	728-848, gnl\|panTro1\|chr9 (44037179-44037309)
	728-848, gnl\|rheMac2\|chr14 (28527466-28527336)