Tra1-TCH01D040057
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCATAAAAGGGAAAAAAGTTTCCGAGTGGCTAAGAGGTGCACCACGGGAGTGTGGCTGG GCTGAGCAAATGGAACAGGAGACGTTTTTTCAAAGGCTTCTCTCGCCTTCTTCTCCCCTC TCTGTCCCCATGCGGAAAGGGGAAAATAGCAGCAGAATCCAGATTGGGGCATGTGAGCCA GTGGTCACCCTCCCCCAACTGGCGCCCCGAGACCCTGGAGACACTTTGATGTCTGGGCAC GTGGCACTCAGGACTGGGAGGCACCAGGGCATCCCAGCTTCTGGACGGGCCTCTCTGAGC TCCTTTTTGAGGGGAGATGAAACACACAGAGCCAGAGAGCAGGGTTTTGAAATGAAGAAA CGTAGGTCAGCGTCCCTGGAGCTCCGCACTGGCCACTGGGGCACGAGTTTGGATGTCAGA AGCCACGCCTGTGGATGTGCTTGGATAATGGGGCCCAGAGAGGGAAGGAGGCTTCCTCCA GGTCACCCAGCAAGTCGGTGGCAGGCCAGAGATGGACACCAGTCTTCAGCCTTCAGCCAG GCTTCTCTCTTGCTGCACAAGGAGGAATGTCTTCAACTGGTACCACATTCTGGAAGCCAC AGCCAGGCCACGGGGACACCGGTTTCCTTGGCAGAGTTGACCTTTGCACCACAGGGGCTG ATGTTTCTCAGTTACCTTTTTTAAACCAACATGTACAGATggagttcccatcgtggctca gtggttaatgaatccgactaggaatcaggaggtcgcgggttcgatccctagccttgctca gtgggttaaggatccagcgttgccatagctgtggtgtagcttgcagacgcgg |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCATAAAAGGGAAAAAAGTTTCCGAGTGGCTAAGAGGTGCACCACGGGAGTGTGGCTGG GCTGAGCAAATGGAACAGGAGACGTTTTTTCAAAGGCTTCTCTCGCCTTCTTCTCCCCTC TCTGTCCCCATGCGGAAAGGGGAAAATAGCAGCAGAATCCAGATTGGGGCATGTGAGCCA GTGGTCACCCTCCCCCAACTGGCGCCCCGAGACCCTGGAGACACTTTGATGTCTGGGCAC GTGGCACTCAGGACTGGGAGGCACCAGGGCATCCCAGCTTCTGGACGGGCCTCTCTGAGC TCCTTTTTGAGGGGAGATGAAACACACAGAGCCAGAGAGCAGGGTTTTGAAATGAAGAAA CGTAGGTCAGCGTCCCTGGAGCTCCGCACTGGCCACTGGGGCACGAGTTTGGATGTCAGA AGCCACGCCTGTGGATGTGCTTGGATAATGGGGCCCAGAGAGGGAAGGAGGCTTCCTCCA GGTCACCCAGCAAGTCGGTGGCAGGCCAGAGATGGACACCAGTCTTCAGCCTTCAGCCAG GCTTCTCTCTTGCTGCACAAGGAGGAATGTCTTCAACTGGTACCACATTCTGGAAGCCAC AGCCAGGCCACGGGGACACCGGTTTCCTTGGCAGAGTTGACCTTTGCACCACAGGGGCTG ATGTTTCTCAGTTACCTTTTTTAAACCAACATGTACAGATggagttcccatcgtggctca gtggttaatgaatccgactaggaatcaggaggtcgcgggttcgatccctagccttgctca gtgggttaaggatccagcgttgccatagctgtggtgtagcttgcagacgcgg |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 101-206, - strand, RNAz p=0.825508 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 101-206, - strand, RNAz p=0.825508 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 3-446, gnl|bosTau2|chr26 (21744499-21744941) | |
| 3-446, gnl|canFam2|chr28 (26850749-26851384) | |
| 3-446, gnl|dasNov1|scaffold_28301 (8700-9254) | |
| 3-446, gnl|echTel1|scaffold_279671 (1101-1709) | |
| 3-446, gnl|hg17|chr10 (114572928-114573581) | |
| 3-446, gnl|Hg17|chr10 (114573124-114573614) | |
| 3-446, gnl|loxAfr1|scaffold_121285 (3713-4352) | |
| 3-446, gnl|mm7|chr19 (55546234-55546980) | |
| 3-446, gnl|Mm7|chr19 (55546417-55547014) | |
| 3-446, gnl|oryCun1|scaffold_202783 (39618-39047) | |
| 3-446, gnl|panTro1|chr8 (116502170-116502823) | |
| 3-446, gnl|rheMac2|chr9 (112481584-112482237) | |
| 3-446, gnl|rn3|chr1 (262123798-262124570) | |
| 447-699, gnl|bosTau2|chr26 (21745011-21745262) | |
| 447-699, gnl|canFam2|chr28 (26851385-26851737) | |
| 447-699, gnl|dasNov1|scaffold_28301 (9255-9606) | |
| 447-699, gnl|hg17|chr10 (114573582-114573920) | |
| 447-699, gnl|Hg17|chr10 (114573685-114574028) | |
| 447-699, gnl|loxAfr1|scaffold_121285 (4353-4687) | |
| 447-699, gnl|mm7|chr19 (55546981-55547300) | |
| 447-699, gnl|Mm7|chr19 (55547090-55547372) | |
| 447-699, gnl|oryCun1|scaffold_202783 (39046-38731) | |
| 447-699, gnl|panTro1|chr8 (116502824-116503160) | |
| 447-699, gnl|rheMac2|chr9 (112482238-112482573) | |
| 447-699, gnl|rn3|chr1 (262124571-262124878) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-446, gnl|bosTau2|chr26 (21744499-21744941) | |
| 3-446, gnl|canFam2|chr28 (26850749-26851384) | |
| 3-446, gnl|dasNov1|scaffold_28301 (8700-9254) | |
| 3-446, gnl|echTel1|scaffold_279671 (1101-1709) | |
| 3-446, gnl|hg17|chr10 (114572928-114573581) | |
| 3-446, gnl|Hg17|chr10 (114573124-114573614) | |
| 3-446, gnl|loxAfr1|scaffold_121285 (3713-4352) | |
| 3-446, gnl|mm7|chr19 (55546234-55546980) | |
| 3-446, gnl|Mm7|chr19 (55546417-55547014) | |
| 3-446, gnl|oryCun1|scaffold_202783 (39618-39047) | |
| 3-446, gnl|panTro1|chr8 (116502170-116502823) | |
| 3-446, gnl|rheMac2|chr9 (112481584-112482237) | |
| 3-446, gnl|rn3|chr1 (262123798-262124570) | |
| 447-699, gnl|bosTau2|chr26 (21745011-21745262) | |
| 447-699, gnl|canFam2|chr28 (26851385-26851737) | |
| 447-699, gnl|dasNov1|scaffold_28301 (9255-9606) | |
| 447-699, gnl|hg17|chr10 (114573582-114573920) | |
| 447-699, gnl|Hg17|chr10 (114573685-114574028) | |
| 447-699, gnl|loxAfr1|scaffold_121285 (4353-4687) | |
| 447-699, gnl|mm7|chr19 (55546981-55547300) | |
| 447-699, gnl|Mm7|chr19 (55547090-55547372) | |
| 447-699, gnl|oryCun1|scaffold_202783 (39046-38731) | |
| 447-699, gnl|panTro1|chr8 (116502824-116503160) | |
| 447-699, gnl|rheMac2|chr9 (112482238-112482573) | |
| 447-699, gnl|rn3|chr1 (262124571-262124878) |