Tra1-TCH01D050056
               |  | TAAGTTCCTATTCTGATTGGTACAGCTCTACTCACAAAAACTTCAAAAACGTGGCTGCCA
AAATTGATAAAGTCGACAAAGTGATGATGGGGAAAAAAATGAAGACACTGGAGGTGGGCA
TGCACATATCAGGCTCGTGTCAGCCCTCCTTCTTTCACTGAGCTGTTCTCATCTCCCATG
TTGAACAGGGAGCACATGTGTTCGTCCCTGCCCAGGGGGCCTGTGATCCTTGGCTCATCA
TTTCACTCGAAATTCCAAGTGGAAATTCCACAGTGGGTTGAGGATCTAGCTTGTCTCTGT
GGAGGCAGTCTCCAgcctggcacagtgggttaaggatccagcgttgctgcaactgtggtg
tccaccacagctctggcttggattggagccctggcctgggaacttctgtatgcTGTGAGG
GGTGGCTGAAAAAGAAAAGAAAAGATTTTAAAATAAATTCCAAGTTATTATCTCTTTAAG
CCAAAGACTGGCTGTCATTTACCTGTGCTGTGACATCATCTCAGTGATTCACATGTGACT
ACTCACAAAAGCCTTAACTAAATTCCAGTTTGATGCTTAAATGTTAAAATATAAAAggag
ttcctgttgtggctcaggggaaacttatctgagtagtatccatgaggacgcaggtttgat
ccctggcctcgctcagtgggtttaagatccggcattgccatgagctgtggtgtaggttgc
agatgcagcttggatcctgagttgctgtgcctgtggtgtangctggcgactacagctccc
atttgacccctcgcctaggaacctccatatg | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | TAAGTTCCTATTCTGATTGGTACAGCTCTACTCACAAAAACTTCAAAAACGTGGCTGCCA
AAATTGATAAAGTCGACAAAGTGATGATGGGGAAAAAAATGAAGACACTGGAGGTGGGCA
TGCACATATCAGGCTCGTGTCAGCCCTCCTTCTTTCACTGAGCTGTTCTCATCTCCCATG
TTGAACAGGGAGCACATGTGTTCGTCCCTGCCCAGGGGGCCTGTGATCCTTGGCTCATCA
TTTCACTCGAAATTCCAAGTGGAAATTCCACAGTGGGTTGAGGATCTAGCTTGTCTCTGT
GGAGGCAGTCTCCAgcctggcacagtgggttaaggatccagcgttgctgcaactgtggtg
tccaccacagctctggcttggattggagccctggcctgggaacttctgtatgcTGTGAGG
GGTGGCTGAAAAAGAAAAGAAAAGATTTTAAAATAAATTCCAAGTTATTATCTCTTTAAG
CCAAAGACTGGCTGTCATTTACCTGTGCTGTGACATCATCTCAGTGATTCACATGTGACT
ACTCACAAAAGCCTTAACTAAATTCCAGTTTGATGCTTAAATGTTAAAATATAAAAggag
ttcctgttgtggctcaggggaaacttatctgagtagtatccatgaggacgcaggtttgat
ccctggcctcgctcagtgggtttaagatccggcattgccatgagctgtggtgtaggttgc
agatgcagcttggatcctgagttgctgtgcctgtggtgtangctggcgactacagctccc
atttgacccctcgcctaggaacctccatatg | 
               |  | 1-260, gnl|bosTau2|chr9 (51800534-51800800) | 
               |  | 1-260, gnl|Hg17|chr6 (152766624-152766365) | 
               |  | 1-260, gnl|Mm7|chr10 (5097400-5097681) | 
| 
 |  | 
               |  | 445-596, gnl|bosTau2|chr9 (51800780-51800929) | 
               |  | 445-596, gnl|canFam2|chr1 (45630710-45630847) | 
               |  | 445-596, gnl|dasNov1|scaffold_2824 (140669-140517) | 
               |  | 445-596, gnl|echTel1|scaffold_276668 (42823-42944) | 
               |  | 445-596, gnl|galGal2|chr3 (48246816-48246927) | 
               |  | 445-596, gnl|hg17|chr6 (152766203-152766351) | 
               |  | 445-596, gnl|Hg17|chr6 (152766385-152766236) | 
               |  | 445-596, gnl|loxAfr1|scaffold_426 (152226-152078) | 
               |  | 445-596, gnl|mm7|chr10 (5097828-5097701) | 
               |  | 445-596, gnl|oryCun1|scaffold_210226 (177542-177445) | 
               |  | 445-596, gnl|panTro1|chr5 (156284261-156284409) | 
               |  | 445-596, gnl|rheMac2|chr4 (110725481-110725335) | 
               |  | 445-596, gnl|rn3|chr1 (36012742-36012872) | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
               |  | 1-260, gnl|bosTau2|chr9 (51800534-51800800) | 
               |  | 1-260, gnl|Hg17|chr6 (152766624-152766365) | 
               |  | 1-260, gnl|Mm7|chr10 (5097400-5097681) | 
| 
 |  | 
               |  | 445-596, gnl|bosTau2|chr9 (51800780-51800929) | 
               |  | 445-596, gnl|canFam2|chr1 (45630710-45630847) | 
               |  | 445-596, gnl|dasNov1|scaffold_2824 (140669-140517) | 
               |  | 445-596, gnl|echTel1|scaffold_276668 (42823-42944) | 
               |  | 445-596, gnl|galGal2|chr3 (48246816-48246927) | 
               |  | 445-596, gnl|hg17|chr6 (152766203-152766351) | 
               |  | 445-596, gnl|Hg17|chr6 (152766385-152766236) | 
               |  | 445-596, gnl|loxAfr1|scaffold_426 (152226-152078) | 
               |  | 445-596, gnl|mm7|chr10 (5097828-5097701) | 
               |  | 445-596, gnl|oryCun1|scaffold_210226 (177542-177445) | 
               |  | 445-596, gnl|panTro1|chr5 (156284261-156284409) | 
               |  | 445-596, gnl|rheMac2|chr4 (110725481-110725335) | 
               |  | 445-596, gnl|rn3|chr1 (36012742-36012872) |