Non-Coding RNA Search

Tra1-TCH01D060003

Sequence:


               
               TTTATGTAGTGAGCTGCCTCCTAGTAATCTGATTATGGTGGTTAGTAGCAACAACTGCCT
GTGAAACAGCCTTCCTCTAGGCCAGGCCCTGAATTCTTTATTTTTGCTGGTGCTAATCTG
TGTCTGGTTTAAAAATCTCCTCGTCACTTTTCCTGGCATCTGCAGTTTCTTTGGCGTGGA
GTTGTTGATGCAGGTGTTTGGTTGATGGAGCATTTCTGTGGAGAAGAAGAACTTCCTTTG
TGGAAATACTTCAGGGAGCTTCCTTGTTCTGTGCCTTTAAGGGGAGACTGCAGCCTGTCA
GTTGTTCTCCCTCAGCCCAGGAGCTCACAGTTCGGCTGCTGATATTTATAACCGTTGTGT
GACCACCCGCCTCTGCCTGCCCCCCCCACCCCAAATTCCAATGCTCTGTAATAATCCTCT
CCATCCCCACTGCAGCAGCTGGGTGGGGAGAAGGTGAAGGCGCTTTTAAGATCTTTAAGT
TTACTTCTGGTTGAACTTTTCCTAGCCCCATTTTAAAGTATTGTCATTAGTATTTTAAAT
ATCAGCATCACAAGCAAAATTCCAAGATTGCAGCCCTTACATCATCTTAAAGGAGCCCCA
TGCCTCAGTGAAAGTAGTATAATCAAAGGGAAGGGATCCAGAGTGTCGATGGATTCCACA
AAAATCTGTCTGAAAACTTTGATAACAAGGGAAGATTTTAAAGCAACATACGAATATATC
CTCAATCAGAAAAAAGGACTGAGCAGTTTCATTTAAGTTTACTGAAATTCTTTGCATGTA
GTGGCAAAGTATTTACAAGTAAGATTCATCGTCATGTGAAACATGTGTGCCCTAAAAAAC
TAGAATTTACCCTCTGCAGAACTTGTGTTTACTGTTGAGTTTTGATTGGTGGACATGGTT
GAGATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATGTAGTGAGCTGCCTCCTAGTAATCTGATTATGGTGGTTAGTAGCAACAACTGCCT
GTGAAACAGCCTTCCTCTAGGCCAGGCCCTGAATTCTTTATTTTTGCTGGTGCTAATCTG
TGTCTGGTTTAAAAATCTCCTCGTCACTTTTCCTGGCATCTGCAGTTTCTTTGGCGTGGA
GTTGTTGATGCAGGTGTTTGGTTGATGGAGCATTTCTGTGGAGAAGAAGAACTTCCTTTG
TGGAAATACTTCAGGGAGCTTCCTTGTTCTGTGCCTTTAAGGGGAGACTGCAGCCTGTCA
GTTGTTCTCCCTCAGCCCAGGAGCTCACAGTTCGGCTGCTGATATTTATAACCGTTGTGT
GACCACCCGCCTCTGCCTGCCCCCCCCACCCCAAATTCCAATGCTCTGTAATAATCCTCT
CCATCCCCACTGCAGCAGCTGGGTGGGGAGAAGGTGAAGGCGCTTTTAAGATCTTTAAGT
TTACTTCTGGTTGAACTTTTCCTAGCCCCATTTTAAAGTATTGTCATTAGTATTTTAAAT
ATCAGCATCACAAGCAAAATTCCAAGATTGCAGCCCTTACATCATCTTAAAGGAGCCCCA
TGCCTCAGTGAAAGTAGTATAATCAAAGGGAAGGGATCCAGAGTGTCGATGGATTCCACA
AAAATCTGTCTGAAAACTTTGATAACAAGGGAAGATTTTAAAGCAACATACGAATATATC
CTCAATCAGAAAAAAGGACTGAGCAGTTTCATTTAAGTTTACTGAAATTCTTTGCATGTA
GTGGCAAAGTATTTACAAGTAAGATTCATCGTCATGTGAAACATGTGTGCCCTAAAAAAC
TAGAATTTACCCTCTGCAGAACTTGTGTTTACTGTTGAGTTTTGATTGGTGGACATGGTT
GAGATGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               149-304, + strand, RNAz p=0.917502

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               149-304, + strand, RNAz p=0.917502

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-905, gnl|bosTau2|chr3 (73214855-73213953)
               

               
               1-905, gnl|Hg17|chr1 (39530110-39531321)
               

               
               1-905, gnl|Mm7|chr4 (122870789-122869216)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-905, gnl|bosTau2|chr3 (73214855-73213953)
               

               
               1-905, gnl|Hg17|chr1 (39530110-39531321)
               

               
               1-905, gnl|Mm7|chr4 (122870789-122869216)

	1-905, gnl\|bosTau2\|chr3 (73214855-73213953)
	1-905, gnl\|Hg17\|chr1 (39530110-39531321)
	1-905, gnl\|Mm7\|chr4 (122870789-122869216)