Non-Coding RNA Search

Tra1-TCH01D070016

Sequence:


               
               GAAGGTCCCGAGGGTGAGGATCTGGCTCGTGACCTGCTGAGCGACCTGAGAAGTGAGAAG
CTGAGCGAGCCGACTAAGGTTTCCTTGCTGGCCCTGAGCTTGGAGTACCCAACCCAGCTG
TGGCCGGACGCCTCTGCGGCCGAAGCAGCCGCCAACTCCCTGTTGGATACGCTGGTCCTT
CTACCCCCGCGGCCTTCGGCTCTGCGGCGGCCCCTGTTGCTGGCTGCCACCACAGCCTTG
GCGGCAGGAGGTGCGCTAGGCCCCACCTCGGGAGCCTCTCGCAGGCTTCTGCCCCTGCTG
CTTGGCTTGGCCTCAGGCCGAGATCTGGGGCGAGGTTTTAGCCCTGCCTCGGAACAGCGC
CCCCTGCAGGCCACAGCGTGGGAGTGCCTACGGGAGCTGGAGAGCTGCAAGCCTGGACTT
GCTGCAGGCGCTGGCCAGGCAGCTGGAGGACCCTGATGGGCGGGACCACGCTCGCCTCTA
CTATATCCTCCTGGCCCACCTGGCGAGGCCCAAGCTGGGGGTGGCCCTGGGCCCCTCCCT
TGCTGCACCTGCACTGGCCTCTTCGCTGGTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGTCCCGAGGGTGAGGATCTGGCTCGTGACCTGCTGAGCGACCTGAGAAGTGAGAAG
CTGAGCGAGCCGACTAAGGTTTCCTTGCTGGCCCTGAGCTTGGAGTACCCAACCCAGCTG
TGGCCGGACGCCTCTGCGGCCGAAGCAGCCGCCAACTCCCTGTTGGATACGCTGGTCCTT
CTACCCCCGCGGCCTTCGGCTCTGCGGCGGCCCCTGTTGCTGGCTGCCACCACAGCCTTG
GCGGCAGGAGGTGCGCTAGGCCCCACCTCGGGAGCCTCTCGCAGGCTTCTGCCCCTGCTG
CTTGGCTTGGCCTCAGGCCGAGATCTGGGGCGAGGTTTTAGCCCTGCCTCGGAACAGCGC
CCCCTGCAGGCCACAGCGTGGGAGTGCCTACGGGAGCTGGAGAGCTGCAAGCCTGGACTT
GCTGCAGGCGCTGGCCAGGCAGCTGGAGGACCCTGATGGGCGGGACCACGCTCGCCTCTA
CTATATCCTCCTGGCCCACCTGGCGAGGCCCAAGCTGGGGGTGGCCCTGGGCCCCTCCCT
TGCTGCACCTGCACTGGCCTCTTCGCTGGTGGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               196-395, + strand, RNAz p=0.995488

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-395, + strand, RNAz p=0.995488

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               304-378, + strand, RNAmicro p=0.993213

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               304-378, + strand, RNAmicro p=0.993213

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               77-460, gnl|bosTau2|chr29 (38706051-38706432)
               

               
               77-460, gnl|Hg17|chr11 (65304391-65304010)
               

               
               77-460, gnl|Mm7|chr19 (5463508-5463889)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-460, gnl|bosTau2|chr29 (38706051-38706432)
               

               
               77-460, gnl|Hg17|chr11 (65304391-65304010)
               

               
               77-460, gnl|Mm7|chr19 (5463508-5463889)

	77-460, gnl\|bosTau2\|chr29 (38706051-38706432)
	77-460, gnl\|Hg17\|chr11 (65304391-65304010)
	77-460, gnl\|Mm7\|chr19 (5463508-5463889)