Tra1-TCH01D070039
               |  | CTTTGTGTTCTCAGAGTATAACTTCAAGACAGCTAAGCTTTTTTTTTCTATTCACAAATA
AAACAACATACCCTTGTGTCTTAGAAATACAGAAACACTTGAAGAAACCATTAAAAATTG
TTGAAAGACGAAAACAAAAACCGAAAACCAAAAAAGCAAACCAAAAAAGCAATGTGCAAA
ATAAAGCAGTTTAAGTGGAAATTAAAAAATCAAAGCCATGAGACCGAAGAGAAACAAACT
ATGTGAACCGCAAGACCCAATCTGGTTACTGTGATTGAGCGTGAAATTTCACTTCCTGGC
AGCCAAAGCCAGAGTCCTTTCCGACTTAAAGGGACCCAGGCCACGCTAGTGTGCTGGGGT
GAAAGGCTGCCGGAGCTGAAATGAGTTCCTTTTCTCTTACCCTGACCCGGATCCTGCCTT
GGAACAACTGTTTTCCCCATATCTCAGCTTTCTTCTCAACCTTCCATTGATCCCTCGCTG
GCTCTCCAGGGCTGTATTGTGTTAAAAAGCTCACTCAAATCCTATTTAGGGTGCTGTTTT
GTGTAGCGAAGAATGCAAATCTTATAATTAAGGCAATTTGTCGTTGAAGTGGTTGCTGGG
ATGTTGCTAAAGGAAATCTGCCATCTTTGCTGAATCAGAAAGTTTACTGAATGCGGGTTC
AAGCAACAGCTGTGTGGTTCATGGGAGAAAAATATCAAATAAAAGAAAGAAGGAAGGTAG
GAAGGGGAGAGGAGGTGAGGGAGCAAACTTTTCTCTGAATCTTTTTCTACGTTCCCCTGA
AGATACTCAGTTTTGGAGTTCCCTCTGTGGCACAACGGGATCGGTGGCATCTTGG | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | CTTTGTGTTCTCAGAGTATAACTTCAAGACAGCTAAGCTTTTTTTTTCTATTCACAAATA
AAACAACATACCCTTGTGTCTTAGAAATACAGAAACACTTGAAGAAACCATTAAAAATTG
TTGAAAGACGAAAACAAAAACCGAAAACCAAAAAAGCAAACCAAAAAAGCAATGTGCAAA
ATAAAGCAGTTTAAGTGGAAATTAAAAAATCAAAGCCATGAGACCGAAGAGAAACAAACT
ATGTGAACCGCAAGACCCAATCTGGTTACTGTGATTGAGCGTGAAATTTCACTTCCTGGC
AGCCAAAGCCAGAGTCCTTTCCGACTTAAAGGGACCCAGGCCACGCTAGTGTGCTGGGGT
GAAAGGCTGCCGGAGCTGAAATGAGTTCCTTTTCTCTTACCCTGACCCGGATCCTGCCTT
GGAACAACTGTTTTCCCCATATCTCAGCTTTCTTCTCAACCTTCCATTGATCCCTCGCTG
GCTCTCCAGGGCTGTATTGTGTTAAAAAGCTCACTCAAATCCTATTTAGGGTGCTGTTTT
GTGTAGCGAAGAATGCAAATCTTATAATTAAGGCAATTTGTCGTTGAAGTGGTTGCTGGG
ATGTTGCTAAAGGAAATCTGCCATCTTTGCTGAATCAGAAAGTTTACTGAATGCGGGTTC
AAGCAACAGCTGTGTGGTTCATGGGAGAAAAATATCAAATAAAAGAAAGAAGGAAGGTAG
GAAGGGGAGAGGAGGTGAGGGAGCAAACTTTTCTCTGAATCTTTTTCTACGTTCCCCTGA
AGATACTCAGTTTTGGAGTTCCCTCTGTGGCACAACGGGATCGGTGGCATCTTGG | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map