Non-Coding RNA Search

Tra1-TCH01D090002

Sequence:


               
               CTACAGGACCAGGTCCCTTCTCAGCTCCTCCATCAGCATTCCAGAATTCCAAGGTGTGCC
TTCTCCATGAGGCTTTTATGAATTATATGAACCTAAACACAAAACTCACATATGTTAGGC
TCTTAGTCTATAGCCCCCAATTCAGACTAAAGTATATACTTTATTATTCACTATTGGTTT
TCAAGTCTCAGTCTTCTCATCCTATGAATGTGTGAGTTTAGGCAGTGACACAAGTCTATC
CAAAGGAGATCAAAGAATCGTTGAACTAGTTCTTTGCATCCGTCAGTGTGTATTTTTTCC
TTCTGTATTCTCCACAGTGCCCAACGTTGAACTTGACAATCCTTATTATCACTCCCTCTT
TGTTTGTGATAGTCCCTCCTTTTGCTCCTGAAAGCCTATCCATGTAGACTCAGCTCCCAT
GAGGCAGGGCTCCGTGAGGCTTGGTGATTCCAGTACCTTAAACAGAACTTGGTACTTGGT
GTCTAACAGGTTGGTTTCAGGGAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtatgtgtgtgtTTCTGAATAACTGAAAGTTCTAGATAGCGTTCAAAGTCCATCTC
TGCAAAGCTGTCCCTTCATTACCCCAAGTGAAAACAAGCACTCCCTCTTCGTAACTCTCA
TAAGGCCTTTGTGCTCCTCTTGTAAACTTCGGCATTTCTCANAGCTGAGTCAAAGACCAC
CTGCATCAGAGCCCTCTGGCATGCCTGATAAAATGTGGATTCCTAGGCTCAGCTCCAGAC
CTGTGGAATCAGACTCTCTGGAGCANGGCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACAGGACCAGGTCCCTTCTCAGCTCCTCCATCAGCATTCCAGAATTCCAAGGTGTGCC
TTCTCCATGAGGCTTTTATGAATTATATGAACCTAAACACAAAACTCACATATGTTAGGC
TCTTAGTCTATAGCCCCCAATTCAGACTAAAGTATATACTTTATTATTCACTATTGGTTT
TCAAGTCTCAGTCTTCTCATCCTATGAATGTGTGAGTTTAGGCAGTGACACAAGTCTATC
CAAAGGAGATCAAAGAATCGTTGAACTAGTTCTTTGCATCCGTCAGTGTGTATTTTTTCC
TTCTGTATTCTCCACAGTGCCCAACGTTGAACTTGACAATCCTTATTATCACTCCCTCTT
TGTTTGTGATAGTCCCTCCTTTTGCTCCTGAAAGCCTATCCATGTAGACTCAGCTCCCAT
GAGGCAGGGCTCCGTGAGGCTTGGTGATTCCAGTACCTTAAACAGAACTTGGTACTTGGT
GTCTAACAGGTTGGTTTCAGGGAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtatgtgtgtgtTTCTGAATAACTGAAAGTTCTAGATAGCGTTCAAAGTCCATCTC
TGCAAAGCTGTCCCTTCATTACCCCAAGTGAAAACAAGCACTCCCTCTTCGTAACTCTCA
TAAGGCCTTTGTGCTCCTCTTGTAAACTTCGGCATTTCTCANAGCTGAGTCAAAGACCAC
CTGCATCAGAGCCCTCTGGCATGCCTGATAAAATGTGGATTCCTAGGCTCAGCTCCAGAC
CTGTGGAATCAGACTCTCTGGAGCANGGCCTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               560-689, - strand, RNAz p=0.802124
               

               
               695-813, - strand, RNAz p=0.958512

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               560-689, - strand, RNAz p=0.802124
               

               
               695-813, - strand, RNAz p=0.958512

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               3-475, gnl|bosTau2|chr20 (14038376-14037899)
               


               
               560-813, gnl|bosTau2|chr20 (14037861-14037607)
               

               
               560-813, gnl|canFam2|chr4 (64597711-64597167)
               

               
               560-813, gnl|echTel1|scaffold_316562 (48765-48308)
               

               
               560-813, gnl|hg17|chr5 (53318020-53318546)
               

               
               560-813, gnl|Hg17|chr5 (53318316-53318071)
               

               
               560-813, gnl|loxAfr1|scaffold_15145 (32676-33124)
               

               
               560-813, gnl|panTro1|chr4 (62956238-62955709)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-475, gnl|bosTau2|chr20 (14038376-14037899)
               


               
               560-813, gnl|bosTau2|chr20 (14037861-14037607)
               

               
               560-813, gnl|canFam2|chr4 (64597711-64597167)
               

               
               560-813, gnl|echTel1|scaffold_316562 (48765-48308)
               

               
               560-813, gnl|hg17|chr5 (53318020-53318546)
               

               
               560-813, gnl|Hg17|chr5 (53318316-53318071)
               

               
               560-813, gnl|loxAfr1|scaffold_15145 (32676-33124)
               

               
               560-813, gnl|panTro1|chr4 (62956238-62955709)

	560-689, - strand, RNAz p=0.802124
	695-813, - strand, RNAz p=0.958512

	3-475, gnl\|bosTau2\|chr20 (14038376-14037899)

	560-813, gnl\|bosTau2\|chr20 (14037861-14037607)
	560-813, gnl\|canFam2\|chr4 (64597711-64597167)
	560-813, gnl\|echTel1\|scaffold_316562 (48765-48308)
	560-813, gnl\|hg17\|chr5 (53318020-53318546)
	560-813, gnl\|Hg17\|chr5 (53318316-53318071)
	560-813, gnl\|loxAfr1\|scaffold_15145 (32676-33124)
	560-813, gnl\|panTro1\|chr4 (62956238-62955709)