Non-Coding RNA Search

Tra1-TCH01D090065

Sequence:


               
               AGATTTGGGGAACTGACTTTTGGTGTAACTGTCACATGGTGAGACAAGACTCATCTGGTA
CAAAGGTAGGTGTTTGCTGAAGCCACTGAAGGTGGTGCACAGAGGAAAACACGGCTCAGA
GGTGCAGTAGAAGGAAGAGCTGGAGATGGGACCCGAGCCCCAGCCCTCTGCCCCTTCTGG
GCCTCAGCTTCCCCATCTGTACACCGGAGAGGAGGGTTTGGGTAAAGGACTTCTAAGGTT
CTGTCCAGTTTGAGGGGCCCTATGGAATATGCATAATGTGTGGCCTTCATTTGAGGTTAG
AACTCCTGGGCAAGGTACTGAGCGTGGAGCCTCCTTGGGCCCAAGGGTAGAACTGTAGTG
GTTCTGAGAACATCTTAGAAATAGATGCAAATTTTTATGGGTTCAGCCTGGGTTTTGGCA
AATCCATCATCCCTCGCGGAGGTTAAAAGACAACTAAGTGTTGTTTACCTGGTGGTAGGG
GCTGATGGAGAGTGGAGCCTCAAAGACTAGGAAAGTGGTCCCTCAAGGAGGGGACCCAGA
GACCACTCCTCCAACACCCACGCCCCCAGACCCTGAATCTGCTTTTACTCATTATATAAC
TGTTCTTTTGAAAAACAGGCAACAAAACCTCCAGAAGAAAAGCTATTGATTAGTAAAGGT
TATTTTGAGGTTCAGAGATTCCTAAGAAAGTGGCTATAATTATTCCTGTTATGACACATC
CTTTTAAATACTCAAATCTGAGAACATCTTGCTTTGAGTCGGTCCTCTTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATTTGGGGAACTGACTTTTGGTGTAACTGTCACATGGTGAGACAAGACTCATCTGGTA
CAAAGGTAGGTGTTTGCTGAAGCCACTGAAGGTGGTGCACAGAGGAAAACACGGCTCAGA
GGTGCAGTAGAAGGAAGAGCTGGAGATGGGACCCGAGCCCCAGCCCTCTGCCCCTTCTGG
GCCTCAGCTTCCCCATCTGTACACCGGAGAGGAGGGTTTGGGTAAAGGACTTCTAAGGTT
CTGTCCAGTTTGAGGGGCCCTATGGAATATGCATAATGTGTGGCCTTCATTTGAGGTTAG
AACTCCTGGGCAAGGTACTGAGCGTGGAGCCTCCTTGGGCCCAAGGGTAGAACTGTAGTG
GTTCTGAGAACATCTTAGAAATAGATGCAAATTTTTATGGGTTCAGCCTGGGTTTTGGCA
AATCCATCATCCCTCGCGGAGGTTAAAAGACAACTAAGTGTTGTTTACCTGGTGGTAGGG
GCTGATGGAGAGTGGAGCCTCAAAGACTAGGAAAGTGGTCCCTCAAGGAGGGGACCCAGA
GACCACTCCTCCAACACCCACGCCCCCAGACCCTGAATCTGCTTTTACTCATTATATAAC
TGTTCTTTTGAAAAACAGGCAACAAAACCTCCAGAAGAAAAGCTATTGATTAGTAAAGGT
TATTTTGAGGTTCAGAGATTCCTAAGAAAGTGGCTATAATTATTCCTGTTATGACACATC
CTTTTAAATACTCAAATCTGAGAACATCTTGCTTTGAGTCGGTCCTCTTCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               119-229, - strand, RNAz p=0.650433

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-229, - strand, RNAz p=0.650433

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               9-754, gnl|bosTau2|chr1 (43507964-43508712)
               

               
               9-754, gnl|Hg17|chr3_random (542183-541462)
               

               
               9-754, gnl|Mm7|chr16 (30987714-30986980)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-754, gnl|bosTau2|chr1 (43507964-43508712)
               

               
               9-754, gnl|Hg17|chr3_random (542183-541462)
               

               
               9-754, gnl|Mm7|chr16 (30987714-30986980)

	9-754, gnl\|bosTau2\|chr1 (43507964-43508712)
	9-754, gnl\|Hg17\|chr3_random (542183-541462)
	9-754, gnl\|Mm7\|chr16 (30987714-30986980)