Non-Coding RNA Search

Tra1-TCH01D100087

Sequence:


               
               ATTTTTGACACACATAGATTGAAGTAATTTTTTTTATCATAACAAAAGGTTTTTAAgagt
tcccattgtggctgtgcaggttaaggtcccgacgttgtctctttgtggatgtgggtttga
tcctggccttgttcagtggattaaggatccagtgttgctgcaagctgcagtgtaggtcat
aggtgcaactgcgatctggtgttaccgtgccgtggctgtagtataggctgcagctgcagc
tccagtttgacccctggcctggaaacttgcgtatgccATGTGGCTGTAAAAAGAAGAAAA
GGCGGGGCTGTTTAGAGGGAAACTAATAGTGAAGTAAATGAAGCTGTCATATTTTGCTAC
CTGAGGAGAAAAACTTGGAAAAAACGTAATTTTTATAAATGAGAAGTTTTGAGATATGTG
ATGTAAGTTTTTATAAATCAGTAGGAAAAGATGGAAAGGCTAAGCCATGGTTTGACAATT
CACAAAAGAAAAAAAATCAATTAATAATGTGGCAGACTGTTTTCCAAAGTTGGCCACAAC
ATCTTCCAGCTCGCATGCTCTTCTGCAGTGTGATATCACTTTCATCAAAAGGTAGCATCT
CTCTACTTCCTTGATTTTGGGTAGGGCCTTTGACTGCTTAGACCAGGAGAATATGGTAGA
AGTTCCAGTTGTTGCTTTTATCTCGCCTGACAACTTCTTCCTGTCTTATGGAAGCCAGCC
ACTATGTAAGAAGTGTAATTACCCTGAAAGCACTACATTGTCAGAAGCCCAAGGTCATGA
AAAGAGGCCCTGGAGGATGAGATNATCAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTGACACACATAGATTGAAGTAATTTTTTTTATCATAACAAAAGGTTTTTAAgagt
tcccattgtggctgtgcaggttaaggtcccgacgttgtctctttgtggatgtgggtttga
tcctggccttgttcagtggattaaggatccagtgttgctgcaagctgcagtgtaggtcat
aggtgcaactgcgatctggtgttaccgtgccgtggctgtagtataggctgcagctgcagc
tccagtttgacccctggcctggaaacttgcgtatgccATGTGGCTGTAAAAAGAAGAAAA
GGCGGGGCTGTTTAGAGGGAAACTAATAGTGAAGTAAATGAAGCTGTCATATTTTGCTAC
CTGAGGAGAAAAACTTGGAAAAAACGTAATTTTTATAAATGAGAAGTTTTGAGATATGTG
ATGTAAGTTTTTATAAATCAGTAGGAAAAGATGGAAAGGCTAAGCCATGGTTTGACAATT
CACAAAAGAAAAAAAATCAATTAATAATGTGGCAGACTGTTTTCCAAAGTTGGCCACAAC
ATCTTCCAGCTCGCATGCTCTTCTGCAGTGTGATATCACTTTCATCAAAAGGTAGCATCT
CTCTACTTCCTTGATTTTGGGTAGGGCCTTTGACTGCTTAGACCAGGAGAATATGGTAGA
AGTTCCAGTTGTTGCTTTTATCTCGCCTGACAACTTCTTCCTGTCTTATGGAAGCCAGCC
ACTATGTAAGAAGTGTAATTACCCTGAAAGCACTACATTGTCAGAAGCCCAAGGTCATGA
AAAGAGGCCCTGGAGGATGAGATNATCAGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               450-557, no strand, RNAz p=0.665361

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               450-557, no strand, RNAz p=0.665361

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               311-663, gnl|bosTau2|chr11 (58554398-58554040)
               

               
               311-663, gnl|Hg17|chr11 (43627504-43627888)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               311-663, gnl|bosTau2|chr11 (58554398-58554040)
               

               
               311-663, gnl|Hg17|chr11 (43627504-43627888)

	311-663, gnl\|bosTau2\|chr11 (58554398-58554040)
	311-663, gnl\|Hg17\|chr11 (43627504-43627888)