Non-Coding RNA Search

Tra1-TCH01D100099

Sequence:


               
               TATGCATGCGTGGGGGTGCAGGGGCCTTGGCAGAAAAGGAGGACAAAGACTGGGGGGTAA
GGGAGGGAGGCAGGGGGGCAGGCATTTTGCATTCAACAGTGGAGTACAATTTGGAAATAC
TTGCCTTGTGTAGCCCTCAGCTGCCTGTGAAATTCATCTGAATCTTGTTCCGTTGGCCTA
TGGGGTATTTTCAAATACAAATTAGGTTGGCCAGAATTCCTTTTCTGCACCAACTCTCCT
GGGTGCAACTTAGAGGTTATTAAGATGCCTAATAAAAGGAGAGAGCACATTTAATAACAT
TACCATCAGCTCGACGGAGCTGAGCTATGTGGGCCCACAGTGCCCCAGAGCCCACAGCCT
CCTGCCACTGGTGCACTTGCTTAGAAGAGGCCCCATAATTATCCACGTTTAAAAAGCACC
ATTAAATCCATTGAGGCAGTCATGTCCCATTTGCAGGGCCTTTCTCCCCACATTACTCGG
GAGACCCAGGGCCTAGCTTCTTGGGGCGGGAGGAGGGGAGAGATTAGATGGAAGTTCCTG
GGTGAAGGTGATGGCTGGTTAAATTCATAAAATCGCAGTTCTGCTCAGCCTTTGTCATCT
CTGTATGAGCTTTTCCTCCCTTTGTTTTAGGTATTTCTTTAGCAAAACTTATGGAGTACT
GTGCCATCACTGCTCACACAGGATTCTGTTTAATCCTCACAACAATTTGGTCAGTAGATT
GTTGGTTCTCAGCGAGCAGTGGTTTTTGCACCCCAGGAGATGTAAGGCAGTGCCTGGAGA
CATTCCTGGTCGTCATACCTGGGGTGAGAGGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGCATGCGTGGGGGTGCAGGGGCCTTGGCAGAAAAGGAGGACAAAGACTGGGGGGTAA
GGGAGGGAGGCAGGGGGGCAGGCATTTTGCATTCAACAGTGGAGTACAATTTGGAAATAC
TTGCCTTGTGTAGCCCTCAGCTGCCTGTGAAATTCATCTGAATCTTGTTCCGTTGGCCTA
TGGGGTATTTTCAAATACAAATTAGGTTGGCCAGAATTCCTTTTCTGCACCAACTCTCCT
GGGTGCAACTTAGAGGTTATTAAGATGCCTAATAAAAGGAGAGAGCACATTTAATAACAT
TACCATCAGCTCGACGGAGCTGAGCTATGTGGGCCCACAGTGCCCCAGAGCCCACAGCCT
CCTGCCACTGGTGCACTTGCTTAGAAGAGGCCCCATAATTATCCACGTTTAAAAAGCACC
ATTAAATCCATTGAGGCAGTCATGTCCCATTTGCAGGGCCTTTCTCCCCACATTACTCGG
GAGACCCAGGGCCTAGCTTCTTGGGGCGGGAGGAGGGGAGAGATTAGATGGAAGTTCCTG
GGTGAAGGTGATGGCTGGTTAAATTCATAAAATCGCAGTTCTGCTCAGCCTTTGTCATCT
CTGTATGAGCTTTTCCTCCCTTTGTTTTAGGTATTTCTTTAGCAAAACTTATGGAGTACT
GTGCCATCACTGCTCACACAGGATTCTGTTTAATCCTCACAACAATTTGGTCAGTAGATT
GTTGGTTCTCAGCGAGCAGTGGTTTTTGCACCCCAGGAGATGTAAGGCAGTGCCTGGAGA
CATTCCTGGTCGTCATACCTGGGGTGAGAGGTGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               238-356, - strand, RNAz p=0.942711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-356, - strand, RNAz p=0.942711

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-813, gnl|bosTau2|chr7 (46678162-46677348)
               

               
               1-813, gnl|Hg17|chr5 (157586020-157586838)
               

               
               1-813, gnl|Mm7|chr11 (45448662-45447879)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-813, gnl|bosTau2|chr7 (46678162-46677348)
               

               
               1-813, gnl|Hg17|chr5 (157586020-157586838)
               

               
               1-813, gnl|Mm7|chr11 (45448662-45447879)

	1-813, gnl\|bosTau2\|chr7 (46678162-46677348)
	1-813, gnl\|Hg17\|chr5 (157586020-157586838)
	1-813, gnl\|Mm7\|chr11 (45448662-45447879)