Tra1-TCH01D110096
               |  | GGAGATTGACGGTGGGAGTAGGAAGGAACCGAAGGGAGTAGAAAAAAGTAAATGGAGGCT
TCACAAGTAACGAGGAATTACGTAGTGTGAGAGGTTGGTAGAATCCAAATTGATTGTGGT
GTTAATTGGATTAAAATGTGGCAGAGAAACCATGGGACTTAAAAGGTATGGTGAGTTGTG
GGACGCTTTCCGATTGCTGGGGAGTTACGGAATACTGTGGGTTTTGTTGCGGGTGGGAGT
ATTGAAGCCGTCTTTTTCACAGACCCCCCCTAATGCGTCATTACTTCTCACTGCGTGCCC
TGCCCGGCCCCCCGCCACACATACAAACACGCGCCATCTCGCAGACACACGTACACATTT
TATCAAACATCCTCCTTTGAAGACTTACATCTCTAGACTGCCCAACTTGGGAAGGAATGG
GAAGTTTTGAAAAGAGCCTGAGGAATGTGGAAAATTAGGGCTAAAAGACCTTGAAAACAG
ATGGAGAAGGCAGAATGCCGAAGTCTTGAGTTATGGTAGATGTTGAGGGAGGTGATGTTG
GCAATTAGGCCTGAGAAGGATGGGGTTGGGGGTGGCTCTTAAGTGTTGTTGGAGAATATT
GCATAATAGGAAATGGATTGGAAGAATGCTTAGGCAGGAAATTGGCAATTGGAGAAGGGA
GCTAAGGGCATATAGCTCANAGTAGTTAGAAACTGTTGAAGATTGAAGGANGGCAGAAGA
ACCCACTAGAAAAGCAACAGATTGTGT | 
Blue-coloured subsequences are predicted RNA structures by RNAz
               |  | GGAGATTGACGGTGGGAGTAGGAAGGAACCGAAGGGAGTAGAAAAAAGTAAATGGAGGCT
TCACAAGTAACGAGGAATTACGTAGTGTGAGAGGTTGGTAGAATCCAAATTGATTGTGGT
GTTAATTGGATTAAAATGTGGCAGAGAAACCATGGGACTTAAAAGGTATGGTGAGTTGTG
GGACGCTTTCCGATTGCTGGGGAGTTACGGAATACTGTGGGTTTTGTTGCGGGTGGGAGT
ATTGAAGCCGTCTTTTTCACAGACCCCCCCTAATGCGTCATTACTTCTCACTGCGTGCCC
TGCCCGGCCCCCCGCCACACATACAAACACGCGCCATCTCGCAGACACACGTACACATTT
TATCAAACATCCTCCTTTGAAGACTTACATCTCTAGACTGCCCAACTTGGGAAGGAATGG
GAAGTTTTGAAAAGAGCCTGAGGAATGTGGAAAATTAGGGCTAAAAGACCTTGAAAACAG
ATGGAGAAGGCAGAATGCCGAAGTCTTGAGTTATGGTAGATGTTGAGGGAGGTGATGTTG
GCAATTAGGCCTGAGAAGGATGGGGTTGGGGGTGGCTCTTAAGTGTTGTTGGAGAATATT
GCATAATAGGAAATGGATTGGAAGAATGCTTAGGCAGGAAATTGGCAATTGGAGAAGGGA
GCTAAGGGCATATAGCTCANAGTAGTTAGAAACTGTTGAAGATTGAAGGANGGCAGAAGA
ACCCACTAGAAAAGCAACAGATTGTGT | 
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map