Non-Coding RNA Search

Tra1-TCH01E010020

Sequence:


               
               TGGTTTGTATTTAACAAGCCTATCAGTGAAGCGATAGCATCTCTGTCTCTCTGTCTCTTG
TCTGTCTCTCTTTGTAAAAAGGAACAGCATATTCCATTGCTTCTTGGGCTGATAACTGCT
AGTACAGATTCAAGTGCAAGATTTTGGGTACCATTTGGCCTAATTTTTTAAATGAGTTGC
CTCAGAACCTTGCATCAAGAAACTGTCCTATCATTGGATGGGCAAGGCCAGTCTTTTAGG
TGAGAGAAAGTAAGAAATCCACCAGATTTATTGGCCAAGGGGTGGGGCTTTCACTCCCTT
TGAAGGATCTCTTACCCCTCCCCCCTCCCTGATGGGCACCACATTCACTTGGCCTACTTT
TCATAGAGGTTTGATTTGGGGTGAATTTTGATCTTCATCTTACCTTTATGGAGAGAGTAA
ATAAAGTCCAGAAGATCTAGAGTATAGGAGCTTAGATATCCATAAGTGATTTGTCTCCTG
GTCAGGGATGGCAGAATTAATTGTACGCTGCTGGACATGGATCTCATTACCATTTTATAG
ATTTTATCACCATGAAAAATGGAAACTACAGATCCTGTCTTCAAACCGACAGTCTAAAGG
TGAAGACTTCACATACAGAGCAATGCTTTTTCCAGAAAGTGGACCTCTTGAGATAGCTGG
TGTTCAGAGGAATACTGGGCACTCCTGAGAACCAAGCCTTGAGCACCACTGTCTAATTTC
ATGCTTATGACAACCCTGTAAATTAGAACCCCTTACTTTCATTGGACAGATGTGAAACCA
GTATATGGGGAAGCTAAGTGTCTTGCCCTGCATGACTCACATAACCATAAGGTGATCATA
TAATTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTTTGTATTTAACAAGCCTATCAGTGAAGCGATAGCATCTCTGTCTCTCTGTCTCTTG
TCTGTCTCTCTTTGTAAAAAGGAACAGCATATTCCATTGCTTCTTGGGCTGATAACTGCT
AGTACAGATTCAAGTGCAAGATTTTGGGTACCATTTGGCCTAATTTTTTAAATGAGTTGC
CTCAGAACCTTGCATCAAGAAACTGTCCTATCATTGGATGGGCAAGGCCAGTCTTTTAGG
TGAGAGAAAGTAAGAAATCCACCAGATTTATTGGCCAAGGGGTGGGGCTTTCACTCCCTT
TGAAGGATCTCTTACCCCTCCCCCCTCCCTGATGGGCACCACATTCACTTGGCCTACTTT
TCATAGAGGTTTGATTTGGGGTGAATTTTGATCTTCATCTTACCTTTATGGAGAGAGTAA
ATAAAGTCCAGAAGATCTAGAGTATAGGAGCTTAGATATCCATAAGTGATTTGTCTCCTG
GTCAGGGATGGCAGAATTAATTGTACGCTGCTGGACATGGATCTCATTACCATTTTATAG
ATTTTATCACCATGAAAAATGGAAACTACAGATCCTGTCTTCAAACCGACAGTCTAAAGG
TGAAGACTTCACATACAGAGCAATGCTTTTTCCAGAAAGTGGACCTCTTGAGATAGCTGG
TGTTCAGAGGAATACTGGGCACTCCTGAGAACCAAGCCTTGAGCACCACTGTCTAATTTC
ATGCTTATGACAACCCTGTAAATTAGAACCCCTTACTTTCATTGGACAGATGTGAAACCA
GTATATGGGGAAGCTAAGTGTCTTGCCCTGCATGACTCACATAACCATAAGGTGATCATA
TAATTTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               529-645, + strand, RNAz p=0.955753

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               529-645, + strand, RNAz p=0.955753

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               58-848, gnl|bosTau2|chr2 (39441837-39441053)
               

               
               58-848, gnl|Hg17|chr2 (134729430-134730113)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-848, gnl|bosTau2|chr2 (39441837-39441053)
               

               
               58-848, gnl|Hg17|chr2 (134729430-134730113)

	58-848, gnl\|bosTau2\|chr2 (39441837-39441053)
	58-848, gnl\|Hg17\|chr2 (134729430-134730113)