Non-Coding RNA Search

Tra1-TCH01E010102

Sequence:


               
               AGGGCAGAAGGGAACATTAAAAGCAAAGGGTTTCCATTTAAATATGGCAAATTAAACACA
TGGAGTTTTTACTCCCTTCAAAACCCTGTTCAggagtttccatcatggctcagcggttaa
ccaaccctactagtatccataagaatgtgagttgaagccctggcctcactcagtgggtta
aggatccggtgttgccatgagctgtggtgtaagtcgcagacatgactcagatccctcgtt
gctgtggcataggctggcagctacagctctccttcaacccccagcgtgagaacctccata
cgccacaggtgcagccATTTAAAAAAATAAAAACTATTCAAATGCCAACAAAGGAATTCT
TCAAAATAGGCACATGACTCAATGATAAGGAAAACAGAGAGTGACAACAATAAATGCGAG
ACATCAACATTTGGGGGGGAATAAATGGAAGGGTGAAAGTTGACTTAGCAGAGCAGAATG
AGATGGGCTTTACCTGCTGAGGTGGTTATTAACAAGCAGCAAACCAGTATTCCGTTGTGA
ATCCAGAAAAGGCTCAGCAGAGGGGGTAAGGATTGGGGGTGGGAAGAAGATCTGTAAGAA
AAAGCCCCTCAGACTCCCGCTTTATCTAATCTAGCCCAGTGATTACCCCTTCTCTGCAAG
AAATGGGAGATTTAATATCTGAAGAAATGGTGGGGATGAAATTATCAAAGAAATGAAGGT
TTCCTAAACTTGAAGGTCCTGAGTTTCTAGACTGACAGCCCATGAGTGCCCGGCATAATG
AATGAAATAGCACCATGAAATTCCAGACCTCAGAGAAAATATAAACCTTTAGAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGCAGAAGGGAACATTAAAAGCAAAGGGTTTCCATTTAAATATGGCAAATTAAACACA
TGGAGTTTTTACTCCCTTCAAAACCCTGTTCAggagtttccatcatggctcagcggttaa
ccaaccctactagtatccataagaatgtgagttgaagccctggcctcactcagtgggtta
aggatccggtgttgccatgagctgtggtgtaagtcgcagacatgactcagatccctcgtt
gctgtggcataggctggcagctacagctctccttcaacccccagcgtgagaacctccata
cgccacaggtgcagccATTTAAAAAAATAAAAACTATTCAAATGCCAACAAAGGAATTCT
TCAAAATAGGCACATGACTCAATGATAAGGAAAACAGAGAGTGACAACAATAAATGCGAG
ACATCAACATTTGGGGGGGAATAAATGGAAGGGTGAAAGTTGACTTAGCAGAGCAGAATG
AGATGGGCTTTACCTGCTGAGGTGGTTATTAACAAGCAGCAAACCAGTATTCCGTTGTGA
ATCCAGAAAAGGCTCAGCAGAGGGGGTAAGGATTGGGGGTGGGAAGAAGATCTGTAAGAA
AAAGCCCCTCAGACTCCCGCTTTATCTAATCTAGCCCAGTGATTACCCCTTCTCTGCAAG
AAATGGGAGATTTAATATCTGAAGAAATGGTGGGGATGAAATTATCAAAGAAATGAAGGT
TTCCTAAACTTGAAGGTCCTGAGTTTCTAGACTGACAGCCCATGAGTGCCCGGCATAATG
AATGAAATAGCACCATGAAATTCCAGACCTCAGAGAAAATATAAACCTTTAGAACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               398-555, - strand, RNAz p=0.86538

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-555, - strand, RNAz p=0.86538

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               337-836, gnl|bosTau2|chr1 (51294557-51294021)
               

               
               337-836, gnl|Hg17|chr3 (185347813-185348971)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               337-836, gnl|bosTau2|chr1 (51294557-51294021)
               

               
               337-836, gnl|Hg17|chr3 (185347813-185348971)

	337-836, gnl\|bosTau2\|chr1 (51294557-51294021)
	337-836, gnl\|Hg17\|chr3 (185347813-185348971)