Non-Coding RNA Search

Tra1-TCH01E030056

Sequence:


               
               AACTCGGTGCCTTGGTTTCCCCATCTGTGAAATGGAGCTAATTATAGCATGAATGTCCTA
AGATGGTTAAGAAAATAAAATAAATAAATGTGTGTAGAAAGCTTAAAACAGGACAGGCTC
AGGAAGGTTTGGCTCTCATCACCATTAAGTAAGGGTATATCTAGATTTTGCCGTCACACC
AGGGCTTGAATTCCAGCTCTGCCTCTAGCTGTATGAACTTGGCAATGCTACTGAGCTCAC
CTGTAAAATGGACTGTTACTACCTACTTCATCGGGCTGTTCTGGCCTTAAAGGAGATAAA
GCTTATAAAGGATGCAATATCAGATCCTCAGGAGACATCAGCCAGTGCCCTGATGTGGAA
TGTAGGGACTGGAGCCTGTGACGGTAGCTTGGCTCCAGGGCGTCTTCCTGGGGAATGTTT
AGTTGGGGGGGGCGGAGCAGGGAGTGGGGTGGAGGGGAGTGGAAGGGAGAATTCCNGGAA
CCTCTGTCTTCTCTTCAGCACCAGGGGAGTAAACCAATAGCCAGAGCGACTTTCCCCTCC
CTGCCCCTGTCCCTCCATCCACCCCTCCCCTGAGAACAGGCTCGGAGACTGGCAGGTGTG
ACTCACGGCTCTGCCATTCACTTACTGGGTGGCCTTAGGCAGGTCACTTGACCCCTCCAA
TTCCCTCCAGCTAGGAATAATTGTGCCCACTTCCCCCAGCAACTGGAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCGGTGCCTTGGTTTCCCCATCTGTGAAATGGAGCTAATTATAGCATGAATGTCCTA
AGATGGTTAAGAAAATAAAATAAATAAATGTGTGTAGAAAGCTTAAAACAGGACAGGCTC
AGGAAGGTTTGGCTCTCATCACCATTAAGTAAGGGTATATCTAGATTTTGCCGTCACACC
AGGGCTTGAATTCCAGCTCTGCCTCTAGCTGTATGAACTTGGCAATGCTACTGAGCTCAC
CTGTAAAATGGACTGTTACTACCTACTTCATCGGGCTGTTCTGGCCTTAAAGGAGATAAA
GCTTATAAAGGATGCAATATCAGATCCTCAGGAGACATCAGCCAGTGCCCTGATGTGGAA
TGTAGGGACTGGAGCCTGTGACGGTAGCTTGGCTCCAGGGCGTCTTCCTGGGGAATGTTT
AGTTGGGGGGGGCGGAGCAGGGAGTGGGGTGGAGGGGAGTGGAAGGGAGAATTCCNGGAA
CCTCTGTCTTCTCTTCAGCACCAGGGGAGTAAACCAATAGCCAGAGCGACTTTCCCCTCC
CTGCCCCTGTCCCTCCATCCACCCCTCCCCTGAGAACAGGCTCGGAGACTGGCAGGTGTG
ACTCACGGCTCTGCCATTCACTTACTGGGTGGCCTTAGGCAGGTCACTTGACCCCTCCAA
TTCCCTCCAGCTAGGAATAATTGTGCCCACTTCCCCCAGCAACTGGAGAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               450-567, - strand, RNAz p=0.991174
               

               
               574-711, - strand, RNAz p=0.967552

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               450-567, - strand, RNAz p=0.991174
               

               
               574-711, - strand, RNAz p=0.967552

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               588-714, - strand, RNAmicro p=0.984897
               

               
               505-771, + strand, RNAmicro p=0.931604

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               588-714, - strand, RNAmicro p=0.984897
               

               
               505-771, + strand, RNAmicro p=0.931604

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-711, gnl|bosTau2|chr17 (32825537-32826154)
               

               
               117-711, gnl|Hg17|chr10 (80613566-80614235)
               

               
               117-711, gnl|Mm7|chr14 (23225697-23226216)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-711, gnl|bosTau2|chr17 (32825537-32826154)
               

               
               117-711, gnl|Hg17|chr10 (80613566-80614235)
               

               
               117-711, gnl|Mm7|chr14 (23225697-23226216)

	450-567, - strand, RNAz p=0.991174
	574-711, - strand, RNAz p=0.967552

	588-714, - strand, RNAmicro p=0.984897
	505-771, + strand, RNAmicro p=0.931604

	117-711, gnl\|bosTau2\|chr17 (32825537-32826154)
	117-711, gnl\|Hg17\|chr10 (80613566-80614235)
	117-711, gnl\|Mm7\|chr14 (23225697-23226216)