Non-Coding RNA Search

Tra1-TCH01E060085

Sequence:


               
               ATATGGCTATATCTGTGTGTGTTTATCTTTGAGTACGCTGCTTATCATTTCTATAGGTTT
TTCCCTAAGGTAGGAATTTACATTAATAGTTCTAGTGGGTACTGCTAAATTACCCTCTGA
GAGGAATATTTAAAAAAAAACAAAAAACAAAAAAACGAACAAATGAACAAAACCAGGAAG
AAGTTCAATGAACAGAGCCAACAGCTGCTAGCAGAAGTTCAGCCCTCTGACTCTTTCCTC
ATGGTGGAGACAACCGCATACTTTGAAGCCTATAGGCACGTCTTGGAAGGACTTCAGGAA
ATCCAAGAGGAAGATGTCCCCTTCCAGAGGAACATTGTAGAGTGTGACTCTCATGTGAAG
GAGCCAAGATACTTGCTGATGGGTGGCAGATACGATTTCATTCCCTTAATAAAGGATCCC
TCGGCCACTGGGGAATCTCTCAGGAACGCCGAGGCCTTGAGATGTTCCAGAGTTAATGTC
TTAGACCCCAGCCAGTGGCCCTCAAAAGAAGCCCTGAAGCTGGATGACTCCCAGATGGAA
GCCTTGCAGTTTGCTCTCACAAGGGAACTGGCTATTATTCAAGGACCTCCTGGAACAGGT
AAGAGACAACTTTTTAAAGCACATGACATCTGCCCTATGAGATAGGCAAGGAGGGCTTGA
CTCTATATTTCTAGAATGTCTAGAAAACATTCCCTTGGTGTTCCCTTGTGGCACAATGAG
ATAATCACCCAGGGTgttccctcatggctcagtgggttaaggatccagcagttatcactg
ctgtggttctggctatagctctggtgcangtttgatctttggcctgggcacttccacatg
ctgtgggTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATGGCTATATCTGTGTGTGTTTATCTTTGAGTACGCTGCTTATCATTTCTATAGGTTT
TTCCCTAAGGTAGGAATTTACATTAATAGTTCTAGTGGGTACTGCTAAATTACCCTCTGA
GAGGAATATTTAAAAAAAAACAAAAAACAAAAAAACGAACAAATGAACAAAACCAGGAAG
AAGTTCAATGAACAGAGCCAACAGCTGCTAGCAGAAGTTCAGCCCTCTGACTCTTTCCTC
ATGGTGGAGACAACCGCATACTTTGAAGCCTATAGGCACGTCTTGGAAGGACTTCAGGAA
ATCCAAGAGGAAGATGTCCCCTTCCAGAGGAACATTGTAGAGTGTGACTCTCATGTGAAG
GAGCCAAGATACTTGCTGATGGGTGGCAGATACGATTTCATTCCCTTAATAAAGGATCCC
TCGGCCACTGGGGAATCTCTCAGGAACGCCGAGGCCTTGAGATGTTCCAGAGTTAATGTC
TTAGACCCCAGCCAGTGGCCCTCAAAAGAAGCCCTGAAGCTGGATGACTCCCAGATGGAA
GCCTTGCAGTTTGCTCTCACAAGGGAACTGGCTATTATTCAAGGACCTCCTGGAACAGGT
AAGAGACAACTTTTTAAAGCACATGACATCTGCCCTATGAGATAGGCAAGGAGGGCTTGA
CTCTATATTTCTAGAATGTCTAGAAAACATTCCCTTGGTGTTCCCTTGTGGCACAATGAG
ATAATCACCCAGGGTgttccctcatggctcagtgggttaaggatccagcagttatcactg
ctgtggttctggctatagctctggtgcangtttgatctttggcctgggcacttccacatg
ctgtgggTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               224-583, - strand, RNAz p=0.975281

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-583, - strand, RNAz p=0.975281

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-140, gnl|bosTau2|chr13 (57741109-57740974)
               


               
               184-681, gnl|bosTau2|chr13 (57742521-57742025)
               

               
               184-681, gnl|Hg17|chr20 (47320300-47319799)
               

               
               184-681, gnl|Mm7|chr2 (166796222-166795741)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-140, gnl|bosTau2|chr13 (57741109-57740974)
               


               
               184-681, gnl|bosTau2|chr13 (57742521-57742025)
               

               
               184-681, gnl|Hg17|chr20 (47320300-47319799)
               

               
               184-681, gnl|Mm7|chr2 (166796222-166795741)

	1-140, gnl\|bosTau2\|chr13 (57741109-57740974)

	184-681, gnl\|bosTau2\|chr13 (57742521-57742025)
	184-681, gnl\|Hg17\|chr20 (47320300-47319799)
	184-681, gnl\|Mm7\|chr2 (166796222-166795741)