Non-Coding RNA Search

Tra1-TCH01E070011

Sequence:


               
               CTTTAACAAAATCACGAGAAGCCTTCAAGATCTTCAGCAGAAAGACATCGGTGTGAAACC
TGAGTTCAGCTTCAACATCCCTCGTGCAAAAAGGGAACTGGCTCAGCTGAACAGATGCAG
CTCTCCACAGCAGAAGCTGGCTTGTTTGCGGAAGGTGGTGCAGCTGATCACCCAGTCTCC
CAGCCAGAGAGTTAACTTGGAGACCATGTGTGCTGATGATCTGCTGTCCGTCCTTTTATA
TTTGCTTGTGAAAACAGAGATCCCTAATTGGATGGCAAATTTGAGTTATATCAAAAACTT
CCGATTCAGCAGCTCAGCCAAGGATGAGCTGGGATACTGCCTGACCTCCATTGAGGCTGC
AATCGAATATATTCGGCAGGGCAGCCTCTCCGTTAAGCCACCGGAGTCTGAGGGATTTGG
CGACAGACTGTTCCTTAAGCAGAGAATGAGCTTACTGTCTCAGATGACATCAACGCCCAT
TGACTGCCTCTTTCAGGTGAGACACCCAGAGGTCCGGCAGGCACAGGTATGCAGGGAGCT
CTCCATCCTTCCGTGCCTCCAGAGTCTCAAAGACTCCATCAGGGTGGTCTGTGCTCGAGG
GGGTCGTAGGAGTGCTGAGGTCTTACAGCGCTCCCCCCCACCCTGGGCCTAGTGCTCTGC
GAGTGGAACCCTCGACCAGGCTGTGCTCCTCTATCCATTCCATGAAACATGACTTGTTCT
TCACAGTCAGCTCGGTGGGGCCTCACCCACAGCCCCGTCGGAACTGGTGCCTCTTCTGGG
CTCCAGGAGCCACCTGACAGATGTTTGTGTGAGCTTGCTGGGCTGGGAGGCTGGCACATC
ANGCAGCTCCCTCCTCGCGTCTGATCAACCACGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTAACAAAATCACGAGAAGCCTTCAAGATCTTCAGCAGAAAGACATCGGTGTGAAACC
TGAGTTCAGCTTCAACATCCCTCGTGCAAAAAGGGAACTGGCTCAGCTGAACAGATGCAG
CTCTCCACAGCAGAAGCTGGCTTGTTTGCGGAAGGTGGTGCAGCTGATCACCCAGTCTCC
CAGCCAGAGAGTTAACTTGGAGACCATGTGTGCTGATGATCTGCTGTCCGTCCTTTTATA
TTTGCTTGTGAAAACAGAGATCCCTAATTGGATGGCAAATTTGAGTTATATCAAAAACTT
CCGATTCAGCAGCTCAGCCAAGGATGAGCTGGGATACTGCCTGACCTCCATTGAGGCTGC
AATCGAATATATTCGGCAGGGCAGCCTCTCCGTTAAGCCACCGGAGTCTGAGGGATTTGG
CGACAGACTGTTCCTTAAGCAGAGAATGAGCTTACTGTCTCAGATGACATCAACGCCCAT
TGACTGCCTCTTTCAGGTGAGACACCCAGAGGTCCGGCAGGCACAGGTATGCAGGGAGCT
CTCCATCCTTCCGTGCCTCCAGAGTCTCAAAGACTCCATCAGGGTGGTCTGTGCTCGAGG
GGGTCGTAGGAGTGCTGAGGTCTTACAGCGCTCCCCCCCACCCTGGGCCTAGTGCTCTGC
GAGTGGAACCCTCGACCAGGCTGTGCTCCTCTATCCATTCCATGAAACATGACTTGTTCT
TCACAGTCAGCTCGGTGGGGCCTCACCCACAGCCCCGTCGGAACTGGTGCCTCTTCTGGG
CTCCAGGAGCCACCTGACAGATGTTTGTGTGAGCTTGCTGGGCTGGGAGGCTGGCACATC
ANGCAGCTCCCTCCTCGCGTCTGATCAACCACGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               73-191, - strand, RNAz p=0.577425

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-191, - strand, RNAz p=0.577425

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               67-191, gnl|bosTau2|chr18 (35421785-35421909)
               

               
               67-191, gnl|Hg17|chr19 (37824894-37824770)
               

               
               67-191, gnl|Mm7|chr7 (32498807-32498930)
               


               
               265-400, gnl|bosTau2|chr18 (35423689-35423824)
               

               
               265-400, gnl|Hg17|chr19 (37822240-37822105)
               

               
               265-400, gnl|Mm7|chr7 (32501341-32501479)
               


               
               403-550, gnl|bosTau2|chr18 (35428379-35428525)
               

               
               403-550, gnl|Hg17|chr19 (37814241-37814093)
               

               
               403-550, gnl|Mm7|chr7 (32505488-32505632)
               


               
               657-828, gnl|bosTau2|chr18 (35428855-35429027)
               

               
               657-828, gnl|Hg17|chr19 (37813345-37813178)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-191, gnl|bosTau2|chr18 (35421785-35421909)
               

               
               67-191, gnl|Hg17|chr19 (37824894-37824770)
               

               
               67-191, gnl|Mm7|chr7 (32498807-32498930)
               


               
               265-400, gnl|bosTau2|chr18 (35423689-35423824)
               

               
               265-400, gnl|Hg17|chr19 (37822240-37822105)
               

               
               265-400, gnl|Mm7|chr7 (32501341-32501479)
               


               
               403-550, gnl|bosTau2|chr18 (35428379-35428525)
               

               
               403-550, gnl|Hg17|chr19 (37814241-37814093)
               

               
               403-550, gnl|Mm7|chr7 (32505488-32505632)
               


               
               657-828, gnl|bosTau2|chr18 (35428855-35429027)
               

               
               657-828, gnl|Hg17|chr19 (37813345-37813178)

	67-191, gnl\|bosTau2\|chr18 (35421785-35421909)
	67-191, gnl\|Hg17\|chr19 (37824894-37824770)
	67-191, gnl\|Mm7\|chr7 (32498807-32498930)

	265-400, gnl\|bosTau2\|chr18 (35423689-35423824)
	265-400, gnl\|Hg17\|chr19 (37822240-37822105)
	265-400, gnl\|Mm7\|chr7 (32501341-32501479)

	403-550, gnl\|bosTau2\|chr18 (35428379-35428525)
	403-550, gnl\|Hg17\|chr19 (37814241-37814093)
	403-550, gnl\|Mm7\|chr7 (32505488-32505632)

	657-828, gnl\|bosTau2\|chr18 (35428855-35429027)
	657-828, gnl\|Hg17\|chr19 (37813345-37813178)