Non-Coding RNA Search

Tra1-TCH01E070036

Sequence:


               
               TACTAGAACAATGGTTCTTAATCTTTTGAGTCACAGATCCCTTTAAAAATCTTATAAAAA
TCACAGTTCTTGCATTAGCAAAATTTAGGAGCACAAAAACTTACTACATTTCCAAAGGAT
TTTTGGAACTCCCTGAAACTCGTCTATAGGTCCTGGCTGATTTAGGACAGGCCTCTAAAA
ACCCTGATTTAGAAGGACAGGCCTCTAAGCCGTAGTATCAGCTGAGATTAAGTTTCCAGC
TTGCAGCCTGTCCTTGGAACAAAGCTGAGGTTTTTGGTGTTCTTTGTCACCCTCCTCTTT
GGGCTGCTCCTCAGCTTCCCAAGAGACTCACTATCAGTGCCTTGAGGGTTCAGCTCAGAA
ACTTACACATTCTGAAACAGGCATTTCAGCAACTTTTGGGGGGTTTTGTACCATCTTGAC
CTACTACCCTTCATTTGAACTGTTGATGCCCCTAAAGCCCCAGAGTTGATTCCATAGGAG
TGTTTCAAATAAGGGGCTCACCTACTAGACTGAGTATCAAAACTAAACAAGATAATTTGC
CTCTGTGTCTCTCAAAAATAGGTTTGACTTCAGTGTAGTACTTCTCAGACTTTTCAGGAT
TGACTTGATAATATCTGAATCTTTTCATTTGATTTCTCTAGACCAAATATATTAAGGGCA
AGGACCATATCTCATACATATGTATAGTACATAGAACCTAGCACATAATACTGTCAATAA
TTATGTATTGAGTAAACTATTGTGAGATGATTATCCCTAGGAGAAAGTAACTTGGACTCT
CTCAATGGCTTTGGCTCACTTTCCCCTTCATTTGGCCCGGGTTGTGTTTTTAACTTAGCC
TGCTCCCTGGTGGGTGATGATGGAGTACCCAGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTAGAACAATGGTTCTTAATCTTTTGAGTCACAGATCCCTTTAAAAATCTTATAAAAA
TCACAGTTCTTGCATTAGCAAAATTTAGGAGCACAAAAACTTACTACATTTCCAAAGGAT
TTTTGGAACTCCCTGAAACTCGTCTATAGGTCCTGGCTGATTTAGGACAGGCCTCTAAAA
ACCCTGATTTAGAAGGACAGGCCTCTAAGCCGTAGTATCAGCTGAGATTAAGTTTCCAGC
TTGCAGCCTGTCCTTGGAACAAAGCTGAGGTTTTTGGTGTTCTTTGTCACCCTCCTCTTT
GGGCTGCTCCTCAGCTTCCCAAGAGACTCACTATCAGTGCCTTGAGGGTTCAGCTCAGAA
ACTTACACATTCTGAAACAGGCATTTCAGCAACTTTTGGGGGGTTTTGTACCATCTTGAC
CTACTACCCTTCATTTGAACTGTTGATGCCCCTAAAGCCCCAGAGTTGATTCCATAGGAG
TGTTTCAAATAAGGGGCTCACCTACTAGACTGAGTATCAAAACTAAACAAGATAATTTGC
CTCTGTGTCTCTCAAAAATAGGTTTGACTTCAGTGTAGTACTTCTCAGACTTTTCAGGAT
TGACTTGATAATATCTGAATCTTTTCATTTGATTTCTCTAGACCAAATATATTAAGGGCA
AGGACCATATCTCATACATATGTATAGTACATAGAACCTAGCACATAATACTGTCAATAA
TTATGTATTGAGTAAACTATTGTGAGATGATTATCCCTAGGAGAAAGTAACTTGGACTCT
CTCAATGGCTTTGGCTCACTTTCCCCTTCATTTGGCCCGGGTTGTGTTTTTAACTTAGCC
TGCTCCCTGGTGGGTGATGATGGAGTACCCAGAACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               230-380, - strand, RNAz p=0.909225

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-380, - strand, RNAz p=0.909225

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-876, gnl|bosTau2|chr3 (25452348-25451469)
               

               
               3-876, gnl|Hg17|chr1 (110247385-110248270)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-876, gnl|bosTau2|chr3 (25452348-25451469)
               

               
               3-876, gnl|Hg17|chr1 (110247385-110248270)

	3-876, gnl\|bosTau2\|chr3 (25452348-25451469)
	3-876, gnl\|Hg17\|chr1 (110247385-110248270)