Non-Coding RNA Search

Tra1-TCH01E080003

Sequence:


               
               TTTAAATGCGTGGAGCAGTTGTAATTAGCCATGAGAAGGCAGAAGAAAGTCTCCATTGGA
GAGAATTGCAAAGGAAGAGGTGCCACCAGAGGATAAAAATCCTCCAATTATTCACACAAG
GGGTATTTGTTTTCTCAAATAGGGACAAACTCCTGGAAAGGATAATGCCTGAATTTTTAT
CAATGGAATTTCACAGACTCTGGCAGGTGGGTGACAGGGAGATTTGAGCCCCTCAAGTGA
CAGCTCGCTCCTAGGCCCTGCCTCAGAAAAGTCCATTCGTCTTGGCAAAGCCCCTCCCAC
GCACGCACAATGTGCCGTCTCCTGCCGGCTTGAGGCTGGACATCTTGTCAGCCCTGCACA
CAAAACGAGAACTGTTTCCCCTGCGCGCAGCTGGCGCGCCCTTTCAGCAGGTCCCAGCTG
CCCGGAGCCGCGCACGCCGCGGGGCCACGCCTCCGGATGAATATTCATGACGCCTTGTGC
TCGGAGACCCGGATTTCACAGACTCTAAAAGGTTTAGATAGAGCATAGGGGTTTTTAGAT
AGGGGTTGGATGGGAGGAGGGAGCTGGGCTTTGTCTGGGCTTGCTTTTTGAAAACTACAA
AGAGGAGAGAGCACATGAAAACTGAAGTCCAGAATTGCTAATCTAGGCCAGGTAAGATTT
GTCAAGGGAGCTCGCTGTTCCTTGTAGTTTATCAAGTCTTTCAGTGTCCCTCTACAACCA
CAACCTGCAATTGCTGGTGTTTCCCAGACAAACTCTCTTCGTAATACTGGTAAGCATGAA
AAGAACCGAGAGTAAGCTGTTAGAGGGTATTATTAAATGCGTGCTTCTTAACTCTCATAC
AGGTAAAACTCTGCGTTAAATATGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAATGCGTGGAGCAGTTGTAATTAGCCATGAGAAGGCAGAAGAAAGTCTCCATTGGA
GAGAATTGCAAAGGAAGAGGTGCCACCAGAGGATAAAAATCCTCCAATTATTCACACAAG
GGGTATTTGTTTTCTCAAATAGGGACAAACTCCTGGAAAGGATAATGCCTGAATTTTTAT
CAATGGAATTTCACAGACTCTGGCAGGTGGGTGACAGGGAGATTTGAGCCCCTCAAGTGA
CAGCTCGCTCCTAGGCCCTGCCTCAGAAAAGTCCATTCGTCTTGGCAAAGCCCCTCCCAC
GCACGCACAATGTGCCGTCTCCTGCCGGCTTGAGGCTGGACATCTTGTCAGCCCTGCACA
CAAAACGAGAACTGTTTCCCCTGCGCGCAGCTGGCGCGCCCTTTCAGCAGGTCCCAGCTG
CCCGGAGCCGCGCACGCCGCGGGGCCACGCCTCCGGATGAATATTCATGACGCCTTGTGC
TCGGAGACCCGGATTTCACAGACTCTAAAAGGTTTAGATAGAGCATAGGGGTTTTTAGAT
AGGGGTTGGATGGGAGGAGGGAGCTGGGCTTTGTCTGGGCTTGCTTTTTGAAAACTACAA
AGAGGAGAGAGCACATGAAAACTGAAGTCCAGAATTGCTAATCTAGGCCAGGTAAGATTT
GTCAAGGGAGCTCGCTGTTCCTTGTAGTTTATCAAGTCTTTCAGTGTCCCTCTACAACCA
CAACCTGCAATTGCTGGTGTTTCCCAGACAAACTCTCTTCGTAATACTGGTAAGCATGAA
AAGAACCGAGAGTAAGCTGTTAGAGGGTATTATTAAATGCGTGCTTCTTAACTCTCATAC
AGGTAAAACTCTGCGTTAAATATGCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               81-195, + strand, RNAz p=0.563814

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-195, + strand, RNAz p=0.563814

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-522, gnl|bosTau2|chr11 (42908151-42908655)
               

               
               4-522, gnl|Hg17|chr2 (64367611-64367092)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-522, gnl|bosTau2|chr11 (42908151-42908655)
               

               
               4-522, gnl|Hg17|chr2 (64367611-64367092)

	4-522, gnl\|bosTau2\|chr11 (42908151-42908655)
	4-522, gnl\|Hg17\|chr2 (64367611-64367092)