Non-Coding RNA Search

Tra1-TCH01E100020

Sequence:


               
               TTGGGAATGCTTCATTGTAGAAGGTCTGGGTTCAGTCAGAACTGGGTTTGAATCCAAGCT
TTGCCACATACGAGTTGTGCCTCCTTTAGAGTTACTTAATCTCCCTCGGGGTTGTTGTGA
GGATTGAATAAGATAATGTCTGTAACATGTTGAGCATCATGCCAGGTTCATAGTAGATGT
TCAGTAAACATTAGCTTCTTTCCTGTCTAGGGTCGTTCCAGCTTTGATACAGAATCTGGG
TTAGTAGACATGTTGACTAATTGAAATGATTGGAACCACATGTTTAGGGAGTTCTGATGC
TATGTTGGTTGGGGATGGGGCGGGGGCAGTTGGGTGAGAAAGTCTGGCCCTTTCTTAAGT
GCCTTCTAAGGAGCTGCCAACTCAGATCTGTGTGTGAGCCACTCCCTCCACCCTATTCTC
TGATGTGGACCCTTGACATTTTCTTAGTTTTATGAAAAGCACTGTGAAACATAGATTCAC
TGCCCTCTTTTGACCTGATTCTGCCCCAAGCCCAGCCCGGGTGCCGCAGGACGCTGAGCT
AAGTAGGATCAGGCCACGATGAGGAGGAGCTGGGTCAGGTAAGGCCTTGGGCTTCCCGAC
TTGTCTGGGCCTGTCTGACCAACTCCAGTAGCGCGCGTGATGCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGGAATGCTTCATTGTAGAAGGTCTGGGTTCAGTCAGAACTGGGTTTGAATCCAAGCT
TTGCCACATACGAGTTGTGCCTCCTTTAGAGTTACTTAATCTCCCTCGGGGTTGTTGTGA
GGATTGAATAAGATAATGTCTGTAACATGTTGAGCATCATGCCAGGTTCATAGTAGATGT
TCAGTAAACATTAGCTTCTTTCCTGTCTAGGGTCGTTCCAGCTTTGATACAGAATCTGGG
TTAGTAGACATGTTGACTAATTGAAATGATTGGAACCACATGTTTAGGGAGTTCTGATGC
TATGTTGGTTGGGGATGGGGCGGGGGCAGTTGGGTGAGAAAGTCTGGCCCTTTCTTAAGT
GCCTTCTAAGGAGCTGCCAACTCAGATCTGTGTGTGAGCCACTCCCTCCACCCTATTCTC
TGATGTGGACCCTTGACATTTTCTTAGTTTTATGAAAAGCACTGTGAAACATAGATTCAC
TGCCCTCTTTTGACCTGATTCTGCCCCAAGCCCAGCCCGGGTGCCGCAGGACGCTGAGCT
AAGTAGGATCAGGCCACGATGAGGAGGAGCTGGGTCAGGTAAGGCCTTGGGCTTCCCGAC
TTGTCTGGGCCTGTCTGACCAACTCCAGTAGCGCGCGTGATGCAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               445-636, - strand, RNAz p=0.925227

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               445-636, - strand, RNAz p=0.925227

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-636, gnl|bosTau2|chr10 (8627251-8626631)
               

               
               1-636, gnl|Hg17|chr15 (63326841-63325896)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr10 (8627251-8626631)
               

               
               1-636, gnl|Hg17|chr15 (63326841-63325896)

	1-636, gnl\|bosTau2\|chr10 (8627251-8626631)
	1-636, gnl\|Hg17\|chr15 (63326841-63325896)