Non-Coding RNA Search

Tra1-TCH01E110001

Sequence:


               
               TACCAATGTCAGTGCTACTTTTGACCCACAGGTACAAAGATCCGTGCAACAGATGCAGGC
TATTGTAGCAGTTAAGAATTATGGCACTGGAACCAGTCTGTATGGGTTTGAATCTGCCTC
TCATTAGCCTTGGGCACAGACTGATGATGTAGACAAAACCTCTTCCAGTCTGCCTCCCCA
GAACCAGAGTGGCCTGGGTCTGGGAGCAGCTGAGACTGCAGATCTAAAGTTTGCCACCAG
GTGGCACAAGGAGCAACTTTTCTCAGTGTCCAAGGTCCAGAGGACACTAAATTCGGCTCT
AAATTCGGTTGTTCAATGGTTTGGGGCACAGGAAGAGAGTGCCCATGAGTATGTATCCTG
GGAGGAAGGAAAGGCTGGACTGAGGGATCAGCATGTGGAAGTGCATGGAATGCCCAATCC
ATGCCATTCTCCCAGATAATGGTCACTGCTTCTTCCCCCAAGGTGGGATATTGCCCAGTG
TCCCTCTCCCTGGCCTCTACCCCACCCCAAGAAAGAACCCAAAGAGAGAATCTGTAGAGG
TTCCAGACTTACCAGGCCACTGGCAGGATTGGCCTTTGCTCCTCCCCAGCGGAAACCCCC
ACCACAGGACAACGGGGGGTAAGTCAGAAGCCTGTGAGGGTGTCCTACCAGGCCCCTTCT
CTGCTGCGTATGGGACCCGCGCCTGGTCTCAGGGCTGCTGGCTTCCAAGTTGGCAGTTGT
GCCTCAAGAGAGAGGCAGAAGTTGATCTGGCTCTTGTATTTGGCAAGCATGCCCTGAATG
CTTGAACCCTTCCTATAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCAATGTCAGTGCTACTTTTGACCCACAGGTACAAAGATCCGTGCAACAGATGCAGGC
TATTGTAGCAGTTAAGAATTATGGCACTGGAACCAGTCTGTATGGGTTTGAATCTGCCTC
TCATTAGCCTTGGGCACAGACTGATGATGTAGACAAAACCTCTTCCAGTCTGCCTCCCCA
GAACCAGAGTGGCCTGGGTCTGGGAGCAGCTGAGACTGCAGATCTAAAGTTTGCCACCAG
GTGGCACAAGGAGCAACTTTTCTCAGTGTCCAAGGTCCAGAGGACACTAAATTCGGCTCT
AAATTCGGTTGTTCAATGGTTTGGGGCACAGGAAGAGAGTGCCCATGAGTATGTATCCTG
GGAGGAAGGAAAGGCTGGACTGAGGGATCAGCATGTGGAAGTGCATGGAATGCCCAATCC
ATGCCATTCTCCCAGATAATGGTCACTGCTTCTTCCCCCAAGGTGGGATATTGCCCAGTG
TCCCTCTCCCTGGCCTCTACCCCACCCCAAGAAAGAACCCAAAGAGAGAATCTGTAGAGG
TTCCAGACTTACCAGGCCACTGGCAGGATTGGCCTTTGCTCCTCCCCAGCGGAAACCCCC
ACCACAGGACAACGGGGGGTAAGTCAGAAGCCTGTGAGGGTGTCCTACCAGGCCCCTTCT
CTGCTGCGTATGGGACCCGCGCCTGGTCTCAGGGCTGCTGGCTTCCAAGTTGGCAGTTGT
GCCTCAAGAGAGAGGCAGAAGTTGATCTGGCTCTTGTATTTGGCAAGCATGCCCTGAATG
CTTGAACCCTTCCTATAACTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               424-536, - strand, RNAz p=0.631663

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               424-536, - strand, RNAz p=0.631663

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-801, gnl|bosTau2|chr7 (21905388-21906180)
               

               
               18-801, gnl|Hg17|chr5 (176961188-176961983)
               

               
               18-801, gnl|Mm7|chr13 (54689529-54690476)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-801, gnl|bosTau2|chr7 (21905388-21906180)
               

               
               18-801, gnl|Hg17|chr5 (176961188-176961983)
               

               
               18-801, gnl|Mm7|chr13 (54689529-54690476)

	18-801, gnl\|bosTau2\|chr7 (21905388-21906180)
	18-801, gnl\|Hg17\|chr5 (176961188-176961983)
	18-801, gnl\|Mm7\|chr13 (54689529-54690476)