Non-Coding RNA Search

Tra1-TCH01E110038

Sequence:


               
               CAACTCCAAGGGGGAATTCTTTTAGGGGTGGGTGGGGAATTAGGTTAAATGATGTGTGTT
CATATGGAAGAATAAATTTTTTAGACTAGCCAAGAAAACTTAGACAGAGAATAGTGAGGT
GGTCCTTGCTTTACAGTGTAGTAAAACAGATTCTAAAATTATCATACTCAGAGCACTGTG
GTATTAGCATTTGAATGAGGATGAACAACAAAGTGCCCAAATCCTTTTATATGTAAGAAA
AATAATTACGAAAACATGAAAGCTTATAGCTTTTACAAGCTGAGACCAGCTATCTTTCCA
GTTGTCTCAAATTAGAAAAGATCTTAAAGAAGGTGGCCAGGCCTCTGTAGGACACCAGAA
ATGCTGATATTGTGTTTATCCTTGATACTCTGTTTATCCTGCCAAGAGGagcacagtgga
accaggaagaagagcctgatcctcatgcggtgcctttccagtgcctctgcaggcaaagct
taacatcacagcatctggcaaagaaaaaaatatttaaagggtccatcttcatttgcacag
agcagacaatgaagggaaaatctggagctgagaagcaatacattgatTGAGTTATTGATT
GATTCCTCTTTTCTTCAATCCAGCTATCCATATCTCGTCCATCAGTAAGTCTTTTTGGTG
CTACCTTGAGAACTACCCTTGCATCTGCCTCTCTCTCTCTCTCTCTCTCTCTNCTCTCTC
TCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTCCAAGGGGGAATTCTTTTAGGGGTGGGTGGGGAATTAGGTTAAATGATGTGTGTT
CATATGGAAGAATAAATTTTTTAGACTAGCCAAGAAAACTTAGACAGAGAATAGTGAGGT
GGTCCTTGCTTTACAGTGTAGTAAAACAGATTCTAAAATTATCATACTCAGAGCACTGTG
GTATTAGCATTTGAATGAGGATGAACAACAAAGTGCCCAAATCCTTTTATATGTAAGAAA
AATAATTACGAAAACATGAAAGCTTATAGCTTTTACAAGCTGAGACCAGCTATCTTTCCA
GTTGTCTCAAATTAGAAAAGATCTTAAAGAAGGTGGCCAGGCCTCTGTAGGACACCAGAA
ATGCTGATATTGTGTTTATCCTTGATACTCTGTTTATCCTGCCAAGAGGagcacagtgga
accaggaagaagagcctgatcctcatgcggtgcctttccagtgcctctgcaggcaaagct
taacatcacagcatctggcaaagaaaaaaatatttaaagggtccatcttcatttgcacag
agcagacaatgaagggaaaatctggagctgagaagcaatacattgatTGAGTTATTGATT
GATTCCTCTTTTCTTCAATCCAGCTATCCATATCTCGTCCATCAGTAAGTCTTTTTGGTG
CTACCTTGAGAACTACCCTTGCATCTGCCTCTCTCTCTCTCTCTCTCTCTCTNCTCTCTC
TCTCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               322-474, + strand, RNAz p=0.829879

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-474, + strand, RNAz p=0.829879

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-266, gnl|bosTau2|chr5 (22682129-22681855)
               

               
               1-266, gnl|canFam2|chr27 (7218212-7218031)
               

               
               1-266, gnl|dasNov1|scaffold_30584 (2092-2193)
               

               
               1-266, gnl|hg17|chr12 (49203642-49203833)
               

               
               1-266, gnl|panTro1|chr10 (50421115-50421306)
               

               
               1-266, gnl|rheMac2|chr11 (47670100-47670308)
               


               
               322-665, gnl|bosTau2|chr5 (22681626-22681282)
               

               
               322-665, gnl|Hg17|chr12 (49203882-49204208)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-266, gnl|bosTau2|chr5 (22682129-22681855)
               

               
               1-266, gnl|canFam2|chr27 (7218212-7218031)
               

               
               1-266, gnl|dasNov1|scaffold_30584 (2092-2193)
               

               
               1-266, gnl|hg17|chr12 (49203642-49203833)
               

               
               1-266, gnl|panTro1|chr10 (50421115-50421306)
               

               
               1-266, gnl|rheMac2|chr11 (47670100-47670308)
               


               
               322-665, gnl|bosTau2|chr5 (22681626-22681282)
               

               
               322-665, gnl|Hg17|chr12 (49203882-49204208)

	1-266, gnl\|bosTau2\|chr5 (22682129-22681855)
	1-266, gnl\|canFam2\|chr27 (7218212-7218031)
	1-266, gnl\|dasNov1\|scaffold_30584 (2092-2193)
	1-266, gnl\|hg17\|chr12 (49203642-49203833)
	1-266, gnl\|panTro1\|chr10 (50421115-50421306)
	1-266, gnl\|rheMac2\|chr11 (47670100-47670308)

	322-665, gnl\|bosTau2\|chr5 (22681626-22681282)
	322-665, gnl\|Hg17\|chr12 (49203882-49204208)