Non-Coding RNA Search

Tra1-TCH01E120065

Sequence:


               
               ATGGCTGTGGTACAGGCTGGCAGTGGCAGCTCTGTGTCAACCCCTATATGCTGTGGGTTT
GGCCATAAAAGGAAAAAAACCTGAGAGATGGGATGCCTTTTCTCTATTTCCTGATTCTCT
GTTCCTGACCTGGAATAGGAATAAAAGGAAGAGAAGGACAAAGGAGAACTAAAGCGAAGA
GGGTAGGATTTCCCACCTCGGGCTCCTTTGAAACAGGTTCCATACACCTGCTCTAAGCTG
GGCCAAGCACCCCAGCGCGTACATAACGCCTTGAGTCGGGGCCCTTGGGTTGTCCTAAGG
CTGCTGGCCAGGCGTGCTGACAGAGCCCAGAGCAGAGGGCCCGGCTGCCCAAGCCTGGGG
TCTGGCCCACCCAGACTGGCAGGAGGTAGGGCAGAACCAAAAGGTGAGGGGCCCCTCTGA
CCAAACTGCCTGTGCCATCCCCAGGGAGATGTTCCCCTGCAGCCCAGTGCCCGTGTGACC
ATGTCTGAGAAGAATGGGGTGCAAGTGCTGGAAATCCACGAAGTCAACCGAGACGACGTG
GGGGTGTACACGTGCATGGTGGTGAATGGGTCGGGGAAGGCCTCCATGTCAGCTGAGCTC
TCCATCCAAGGTAGCAGGTTGGGGGCGGGGAGAGGGCAGGACAGTCCCTTCCCGGGGGGC
CCCCCCCGCCCTCCCGGGAGGAGCTGTTTGCTCATCACACGTTTCTGTGTTACATGCGTC
ACACTTANGTACTCATGAATCTGTTCCCAGGATCAAGATCTTGAACCAGAAGAAAGGAAG
TGGGCANGCAGCCCAGACACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCTGTGGTACAGGCTGGCAGTGGCAGCTCTGTGTCAACCCCTATATGCTGTGGGTTT
GGCCATAAAAGGAAAAAAACCTGAGAGATGGGATGCCTTTTCTCTATTTCCTGATTCTCT
GTTCCTGACCTGGAATAGGAATAAAAGGAAGAGAAGGACAAAGGAGAACTAAAGCGAAGA
GGGTAGGATTTCCCACCTCGGGCTCCTTTGAAACAGGTTCCATACACCTGCTCTAAGCTG
GGCCAAGCACCCCAGCGCGTACATAACGCCTTGAGTCGGGGCCCTTGGGTTGTCCTAAGG
CTGCTGGCCAGGCGTGCTGACAGAGCCCAGAGCAGAGGGCCCGGCTGCCCAAGCCTGGGG
TCTGGCCCACCCAGACTGGCAGGAGGTAGGGCAGAACCAAAAGGTGAGGGGCCCCTCTGA
CCAAACTGCCTGTGCCATCCCCAGGGAGATGTTCCCCTGCAGCCCAGTGCCCGTGTGACC
ATGTCTGAGAAGAATGGGGTGCAAGTGCTGGAAATCCACGAAGTCAACCGAGACGACGTG
GGGGTGTACACGTGCATGGTGGTGAATGGGTCGGGGAAGGCCTCCATGTCAGCTGAGCTC
TCCATCCAAGGTAGCAGGTTGGGGGCGGGGAGAGGGCAGGACAGTCCCTTCCCGGGGGGC
CCCCCCCGCCCTCCCGGGAGGAGCTGTTTGCTCATCACACGTTTCTGTGTTACATGCGTC
ACACTTANGTACTCATGAATCTGTTCCCAGGATCAAGATCTTGAACCAGAAGAAAGGAAG
TGGGCANGCAGCCCAGACACG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               263-417, + strand, RNAz p=0.977576

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-417, + strand, RNAz p=0.977576

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               71-797, gnl|bosTau2|chr1 (41553813-41554543)
               

               
               71-797, gnl|Hg17|chr3 (124939462-124938438)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-797, gnl|bosTau2|chr1 (41553813-41554543)
               

               
               71-797, gnl|Hg17|chr3 (124939462-124938438)

	71-797, gnl\|bosTau2\|chr1 (41553813-41554543)
	71-797, gnl\|Hg17\|chr3 (124939462-124938438)