Non-Coding RNA Search

Tra1-TCH01F020005

Sequence:


               
               CATGTTAACCTAGAGCACAGCTCCCCACCCTGAAAACTCTTGGTGGCTGCCGGACTGTAG
CTTCTGACCGCTCTGTCCCCCAGCAGGCTTTTCTGTATGTCCCCCGTCAGCAATGTGCTT
GCTTAAGTAATGGTCAGTCCCAGTTACTACTGCTGTCTAGACTTTTCAGTTTATCATCTG
GTAGGCGTGCTGCAGAATCACTCTGGCTGGCATTTGGGGGCCCCACCCAAACAATTTGCA
CTCCAAGAAACACGATACTTAAAGTGGGGCTTACAGAAGAGTAAAGATGTGTGGTTATTC
CCCACGGGTTTGCCTGCCTTGTACCGAAGGAGGGGATTTTTCTGGTGATTATGCTGGGGT
TAGTAACCCCGGGCAATGATGATGATGATGAGATGAAATAATTACTTCTAGACCGATCTG
AATTGTCAGTGCTGAGGCCTGTGGACACTTAGCCCACACTCTGAAGCCGAGATAAACGCA
AGCTTGCATCCTTTTTGGGCCAGTATTAACTCTTGCACAAATTCGGACTCCCAGACTCTT
CCGTCTGTACTTGGTTTCCAGTGGAGCGCTGAGAAAGTTGTCTCATTCTTCCTGTCCAGC
CTTTTCCATCGCGCAAATTTGACCTTTAACATTTTCTTGTTTTGTAGGAGTGTCTGTCTC
TCGGCTGGCTTTTGTGTCCTTAAAGTTGCAAAGTTTGGTTCCTAATCCAAGTAAGCGTGC
TGTGCTAGGCGGCAGGCACTTTCCTCTGCTGTGTCTGGGGTTCCACCGACCAGCACAGAC
GCAGGACTCCTGGCCCCTGTGGCGCGGGTTCAAGAATGCTCAGCTGGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGTTAACCTAGAGCACAGCTCCCCACCCTGAAAACTCTTGGTGGCTGCCGGACTGTAG
CTTCTGACCGCTCTGTCCCCCAGCAGGCTTTTCTGTATGTCCCCCGTCAGCAATGTGCTT
GCTTAAGTAATGGTCAGTCCCAGTTACTACTGCTGTCTAGACTTTTCAGTTTATCATCTG
GTAGGCGTGCTGCAGAATCACTCTGGCTGGCATTTGGGGGCCCCACCCAAACAATTTGCA
CTCCAAGAAACACGATACTTAAAGTGGGGCTTACAGAAGAGTAAAGATGTGTGGTTATTC
CCCACGGGTTTGCCTGCCTTGTACCGAAGGAGGGGATTTTTCTGGTGATTATGCTGGGGT
TAGTAACCCCGGGCAATGATGATGATGATGAGATGAAATAATTACTTCTAGACCGATCTG
AATTGTCAGTGCTGAGGCCTGTGGACACTTAGCCCACACTCTGAAGCCGAGATAAACGCA
AGCTTGCATCCTTTTTGGGCCAGTATTAACTCTTGCACAAATTCGGACTCCCAGACTCTT
CCGTCTGTACTTGGTTTCCAGTGGAGCGCTGAGAAAGTTGTCTCATTCTTCCTGTCCAGC
CTTTTCCATCGCGCAAATTTGACCTTTAACATTTTCTTGTTTTGTAGGAGTGTCTGTCTC
TCGGCTGGCTTTTGTGTCCTTAAAGTTGCAAAGTTTGGTTCCTAATCCAAGTAAGCGTGC
TGTGCTAGGCGGCAGGCACTTTCCTCTGCTGTGTCTGGGGTTCCACCGACCAGCACAGAC
GCAGGACTCCTGGCCCCTGTGGCGCGGGTTCAAGAATGCTCAGCTGGACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               509-628, - strand, RNAz p=0.793633

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               509-628, - strand, RNAz p=0.793633

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-830, gnl|bosTau2|chr15 (40552524-40551695)
               

               
               1-830, gnl|Hg17|chr11 (36363179-36364030)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-830, gnl|bosTau2|chr15 (40552524-40551695)
               

               
               1-830, gnl|Hg17|chr11 (36363179-36364030)

	1-830, gnl\|bosTau2\|chr15 (40552524-40551695)
	1-830, gnl\|Hg17\|chr11 (36363179-36364030)