Non-Coding RNA Search

Tra1-TCH01F020039

Sequence:


               
               AAATATCCCTTCAAGTGATGATTAGCTTATGTTTGATATTATCATTCCTCAGGATTGATT
GATAGTCTTTTACCACTTGTCTGTAGCAATTTTCCTATCATTTATAACTTGTCAAAAAAA
ATTATGTTAGGTTTGAGGAGGATTTGGAATTCTGAGGATGGTTTTGATTCAAGGAGATAA
CAGAAAGTAGCTAAAATGCAGGGGGGAAATGAGAATGAAGGACCAATAATGCCTGAGAAT
CTGAAGATGTACATAATGTTCTCAGTATTTTTCCATTACAGCTGAAATCTTTGGCCTGTT
AGGAATATCTGAGCTCATTTAACTTCATGATCTTCAGATCATATTTTTGGAGCTCTAAGT
TCAAGTTATGTTGATGAAGTGTGCTCAGATGGTTCAAAGAAGTTAGGTTTTGGGGGCCGA
ATCACAAGAATGTGTTGGATAAACGTGACTGCTGTCTAGCTTTGAAAAGAAGATGAATTG
GGCCAAGGTCTGTGCCCCAATCACCCAGCCACTGGGTGATTGTGCAATCACAGATATAGT
AAGAGGAAATTCCTTGCCCTCCTGCTCAACAAACTTAGGGCCAACATACTCTACTTGACA
CAAAACACAAATCTTTTCTGAAGGCTTATATTGTGCGATATAATATTAATAGTGAACTTT
AGAGATCAACTTCTGCTGGGTGGATAGGGTGGGTGCTATTTGAAAATATCCAATCTCTAT
CATCACTAGAGAACACTGACATGCTGAAGGAACCATGGGCTACTGGTAAATAGTTTTTTC
TAGAAGATACACTCCTCATTTATTTTCATTGTCTCTGGATTAAAACTTGATAGGGATTAG
TAATATTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATATCCCTTCAAGTGATGATTAGCTTATGTTTGATATTATCATTCCTCAGGATTGATT
GATAGTCTTTTACCACTTGTCTGTAGCAATTTTCCTATCATTTATAACTTGTCAAAAAAA
ATTATGTTAGGTTTGAGGAGGATTTGGAATTCTGAGGATGGTTTTGATTCAAGGAGATAA
CAGAAAGTAGCTAAAATGCAGGGGGGAAATGAGAATGAAGGACCAATAATGCCTGAGAAT
CTGAAGATGTACATAATGTTCTCAGTATTTTTCCATTACAGCTGAAATCTTTGGCCTGTT
AGGAATATCTGAGCTCATTTAACTTCATGATCTTCAGATCATATTTTTGGAGCTCTAAGT
TCAAGTTATGTTGATGAAGTGTGCTCAGATGGTTCAAAGAAGTTAGGTTTTGGGGGCCGA
ATCACAAGAATGTGTTGGATAAACGTGACTGCTGTCTAGCTTTGAAAAGAAGATGAATTG
GGCCAAGGTCTGTGCCCCAATCACCCAGCCACTGGGTGATTGTGCAATCACAGATATAGT
AAGAGGAAATTCCTTGCCCTCCTGCTCAACAAACTTAGGGCCAACATACTCTACTTGACA
CAAAACACAAATCTTTTCTGAAGGCTTATATTGTGCGATATAATATTAATAGTGAACTTT
AGAGATCAACTTCTGCTGGGTGGATAGGGTGGGTGCTATTTGAAAATATCCAATCTCTAT
CATCACTAGAGAACACTGACATGCTGAAGGAACCATGGGCTACTGGTAAATAGTTTTTTC
TAGAAGATACACTCCTCATTTATTTTCATTGTCTCTGGATTAAAACTTGATAGGGATTAG
TAATATTTTCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               275-394, - strand, RNAz p=0.872664
               

               
               475-703, + strand, RNAz p=0.986413

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               275-394, - strand, RNAz p=0.872664
               

               
               475-703, + strand, RNAz p=0.986413

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               48-851, gnl|bosTau2|chr9 (50039361-50040162)
               

               
               48-851, gnl|Hg17|chr6 (149186693-149187892)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-851, gnl|bosTau2|chr9 (50039361-50040162)
               

               
               48-851, gnl|Hg17|chr6 (149186693-149187892)

	275-394, - strand, RNAz p=0.872664
	475-703, + strand, RNAz p=0.986413

	48-851, gnl\|bosTau2\|chr9 (50039361-50040162)
	48-851, gnl\|Hg17\|chr6 (149186693-149187892)