Non-Coding RNA Search

Tra1-TCH01F050067

Sequence:


               
               TTGTCAAAGTTGGACCCCACCCGCCTACCTGAAAAATGTTAATCACTTAAGCACCTAATA
TTAACAAAGCCAGGGAGTTTGCTGGGCTTATGCGAAACGGACTGAGAGTTACTCTCTGTT
CTCTGCCTGGCGCCTGCAGTTTAGTTTGGTCAAGCTGACCTCCTCTGGTCTCATTTAAGT
CTTTCCCACCTCCCTCCCCCGCCCCCAGACTCTCTACAGAAAGGGAGCAATCCTTCCCCC
TGAAGTCAGCATCATAGCAGAAGGAAGTGGGAAAGGAGGGACCACCCGGACTAAACTGAG
GGCCTCGGCTAGAAATAAAAAGTCTGAGTCAGTAGAGCCCCATACTGTCCTTGCCCTCAT
AGCTGGGCAGGTTGCCATGGTTACTCCCCTTCCTGACTCTTTCTCCTACCTTGGAAGGAA
GCCTGAGACTCCAGGGTAAGCAAAATCTGAACAAATTGCTTCCTGGTCTGAAAATGGAAG
TTACTTTTTCATTAAGTGAGGTAGAATCTCCTCTCTACCCAGCTTATCCTTTTCCTCTTC
TTCCCAACTTATTCTAATCCAAAATTTTACTCCAAATGTTCAAATTCTTGCTAATTCCTA
CATTGTTGCAATAGAGAAACAGTAGGGCTTATGAAGCTTCAGGAACATAAAAGCTATTGT
CTCAATATAGAAGCAGCCTGGCAATGTTTCTCTGCTGCCATAACTTATAACTTAGCCCCT
AAGCTAGCTAGCGGCAAGTGACCTTTAACTACTGTAAAATTTTGAGTGAACTGGGGGGTG
GAATGGGGTGGTGCTGAGTGAGTGTCACCTGCAGGGACGTTACCAGGAGGCAGAATGCAT
GAGCGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTCAAAGTTGGACCCCACCCGCCTACCTGAAAAATGTTAATCACTTAAGCACCTAATA
TTAACAAAGCCAGGGAGTTTGCTGGGCTTATGCGAAACGGACTGAGAGTTACTCTCTGTT
CTCTGCCTGGCGCCTGCAGTTTAGTTTGGTCAAGCTGACCTCCTCTGGTCTCATTTAAGT
CTTTCCCACCTCCCTCCCCCGCCCCCAGACTCTCTACAGAAAGGGAGCAATCCTTCCCCC
TGAAGTCAGCATCATAGCAGAAGGAAGTGGGAAAGGAGGGACCACCCGGACTAAACTGAG
GGCCTCGGCTAGAAATAAAAAGTCTGAGTCAGTAGAGCCCCATACTGTCCTTGCCCTCAT
AGCTGGGCAGGTTGCCATGGTTACTCCCCTTCCTGACTCTTTCTCCTACCTTGGAAGGAA
GCCTGAGACTCCAGGGTAAGCAAAATCTGAACAAATTGCTTCCTGGTCTGAAAATGGAAG
TTACTTTTTCATTAAGTGAGGTAGAATCTCCTCTCTACCCAGCTTATCCTTTTCCTCTTC
TTCCCAACTTATTCTAATCCAAAATTTTACTCCAAATGTTCAAATTCTTGCTAATTCCTA
CATTGTTGCAATAGAGAAACAGTAGGGCTTATGAAGCTTCAGGAACATAAAAGCTATTGT
CTCAATATAGAAGCAGCCTGGCAATGTTTCTCTGCTGCCATAACTTATAACTTAGCCCCT
AAGCTAGCTAGCGGCAAGTGACCTTTAACTACTGTAAAATTTTGAGTGAACTGGGGGGTG
GAATGGGGTGGTGCTGAGTGAGTGTCACCTGCAGGGACGTTACCAGGAGGCAGAATGCAT
GAGCGCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               157-276, - strand, RNAz p=0.999905
               

               
               317-588, - strand, RNAz p=0.998082

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-276, - strand, RNAz p=0.999905
               

               
               317-588, - strand, RNAz p=0.998082

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               157-276, DB803022 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB803022.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               157-276, DB803022 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB803022.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-848, gnl|bosTau2|chr20 (21548206-21547376)
               

               
               1-848, gnl|Hg17|chr5 (39457111-39456327)
               

               
               1-848, gnl|Mm7|chr15 (6217534-6218303)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-848, gnl|bosTau2|chr20 (21548206-21547376)
               

               
               1-848, gnl|Hg17|chr5 (39457111-39456327)
               

               
               1-848, gnl|Mm7|chr15 (6217534-6218303)

	157-276, - strand, RNAz p=0.999905
	317-588, - strand, RNAz p=0.998082

	1-848, gnl\|bosTau2\|chr20 (21548206-21547376)
	1-848, gnl\|Hg17\|chr5 (39457111-39456327)
	1-848, gnl\|Mm7\|chr15 (6217534-6218303)