Non-Coding RNA Search

Tra1-TCH01F060029

Sequence:


               
               TTATATGTGCAGATGGCTTAAAGACTTAACAGTTCTATAGGATCCTGTTATGAAGAAACC
AAACATCCTTCTCCACTTCCCTACGGAAAACTCCTTTTCCACTCCCCCAAGACAACCGCT
TTCCACTCTTAGCTGTTCATTTTGGTAAAGAAATATCATCTGTTGACCTCACACCATGAA
TGATGAGGCTTTAGCTCTCTTTCAAACATATCTTCTACTTCCTATCCACCCCATCCCCAG
TAGCTATATTGTAATTTCTGTTTGATTACTGATCAGCAGTTTTATTTTTATCACTGTGTT
AGcacagctgagccatatagtgtactataattatttttccctctttgtaccacttttgtt
tcctttgagttactaattatcttgtttcttcccttgcttagttttcCCTCCATGTCTCTT
TCATCCTAAACTTGTCTTTCCAGGCATTTCAGCATATCAAGTATTCTGTTATTTTCTTCT
TGGAGCCATCCCTCATGAGGCTGCTGACCTGCTCCAGTCTGGGCTAGTTGCCTCTACCCT
GCTGCACAGCTGTCATCCTGGGATTTTCCTTCATCATTATTGGGAGTCCCTTGGCTCTAG
CTCTTCTAGTAGATCCCTGGTTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGTT
TTCGGTGTTTTCGTTTTGTTTTGTTTTTTTGTCTTTTGTCTTTTTAGGGCTGCACCCGAG
GCATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATATGTGCAGATGGCTTAAAGACTTAACAGTTCTATAGGATCCTGTTATGAAGAAACC
AAACATCCTTCTCCACTTCCCTACGGAAAACTCCTTTTCCACTCCCCCAAGACAACCGCT
TTCCACTCTTAGCTGTTCATTTTGGTAAAGAAATATCATCTGTTGACCTCACACCATGAA
TGATGAGGCTTTAGCTCTCTTTCAAACATATCTTCTACTTCCTATCCACCCCATCCCCAG
TAGCTATATTGTAATTTCTGTTTGATTACTGATCAGCAGTTTTATTTTTATCACTGTGTT
AGcacagctgagccatatagtgtactataattatttttccctctttgtaccacttttgtt
tcctttgagttactaattatcttgtttcttcccttgcttagttttcCCTCCATGTCTCTT
TCATCCTAAACTTGTCTTTCCAGGCATTTCAGCATATCAAGTATTCTGTTATTTTCTTCT
TGGAGCCATCCCTCATGAGGCTGCTGACCTGCTCCAGTCTGGGCTAGTTGCCTCTACCCT
GCTGCACAGCTGTCATCCTGGGATTTTCCTTCATCATTATTGGGAGTCCCTTGGCTCTAG
CTCTTCTAGTAGATCCCTGGTTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGTT
TTCGGTGTTTTCGTTTTGTTTTGTTTTTTTGTCTTTTGTCTTTTTAGGGCTGCACCCGAG
GCATATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               488-605, + strand, RNAz p=0.886856

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               488-605, + strand, RNAz p=0.886856

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-624, gnl|bosTau2|chr11 (23091073-23090471)
               

               
               18-624, gnl|Hg17|chr2 (46696461-46697065)
               

               
               18-624, gnl|Mm7|chr17 (85278606-85279166)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-624, gnl|bosTau2|chr11 (23091073-23090471)
               

               
               18-624, gnl|Hg17|chr2 (46696461-46697065)
               

               
               18-624, gnl|Mm7|chr17 (85278606-85279166)

	18-624, gnl\|bosTau2\|chr11 (23091073-23090471)
	18-624, gnl\|Hg17\|chr2 (46696461-46697065)
	18-624, gnl\|Mm7\|chr17 (85278606-85279166)