Tra1-TCH01F080004
|
AGCAAGGAGGCTGTCCCGGAGGCCCATCAACCTCGGGAAAGAGCAGGAGCCGGCCGAAGG
GCGGACATGAGCGACCAGCAGAGTCCAGCACCGAGCCGATAGGGGCGAACCCAGCAGCCC
CTAAGTTCTCTCCCGCACCTCAGAATCTAAGAGGATGGAACCAAATACCTGTAAGACCAG
TGAGTCAGAGGAAGACTGTGTTGAAGAAGAGGAATCCGAGGAGGAATGTGTTAAAGAGGA
TGTTACCGTCACTTCTAACCCTTCTCAACAGGCACTCTCAAAGGCTGACTGTAATGCGTT
TAAGAATGGAGTTCCCTTATCTATTATAGCCAAGAAAATACCAAAGGAAATCATCCCAAC
TGACCTAGATGACTTAGAAGTTGGAAGGAGAAAGAGAAGGCGGAAACGCAGACCCCTGGC
CATCAACTTGACCAACTGCAAGTATGAGAGTGTGCGTCGTGCAGCTCAAATGTGTGGCCT
GAAGGAGGTGGGGGAGGACGAAGAATGGACTGTGTATTGGACAGACTGCTCTGTCTCATT
GGAACGAGTCATGGACATGAAGAGATTTCAGAAAATCAACCACTTCCCTGGCATGACAGA
AATCTGCCGCAAAGATCTGCTGGCTCGGAACCTCAACCGCATGCAGAAACTCTACCCCGC
TGAGTACAACATCTTCCCCCGCACCTGGTGCCTCCCAGCAGACTATGGGGACTTCCAGTC
CTACGGTCGTCAGCGGAAAACCCGCACTTATATCTGCAAGCCAGACAGTGGCTGTCAGGG
ACGTGGCATCTTCATCACCCGAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCAAGGAGGCTGTCCCGGAGGCCCATCAACCTCGGGAAAGAGCAGGAGCCGGCCGAAGG
GCGGACATGAGCGACCAGCAGAGTCCAGCACCGAGCCGATAGGGGCGAACCCAGCAGCCC
CTAAGTTCTCTCCCGCACCTCAGAATCTAAGAGGATGGAACCAAATACCTGTAAGACCAG
TGAGTCAGAGGAAGACTGTGTTGAAGAAGAGGAATCCGAGGAGGAATGTGTTAAAGAGGA
TGTTACCGTCACTTCTAACCCTTCTCAACAGGCACTCTCAAAGGCTGACTGTAATGCGTT
TAAGAATGGAGTTCCCTTATCTATTATAGCCAAGAAAATACCAAAGGAAATCATCCCAAC
TGACCTAGATGACTTAGAAGTTGGAAGGAGAAAGAGAAGGCGGAAACGCAGACCCCTGGC
CATCAACTTGACCAACTGCAAGTATGAGAGTGTGCGTCGTGCAGCTCAAATGTGTGGCCT
GAAGGAGGTGGGGGAGGACGAAGAATGGACTGTGTATTGGACAGACTGCTCTGTCTCATT
GGAACGAGTCATGGACATGAAGAGATTTCAGAAAATCAACCACTTCCCTGGCATGACAGA
AATCTGCCGCAAAGATCTGCTGGCTCGGAACCTCAACCGCATGCAGAAACTCTACCCCGC
TGAGTACAACATCTTCCCCCGCACCTGGTGCCTCCCAGCAGACTATGGGGACTTCCAGTC
CTACGGTCGTCAGCGGAAAACCCGCACTTATATCTGCAAGCCAGACAGTGGCTGTCAGGG
ACGTGGCATCTTCATCACCCGAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
138-411, gnl|bosTau2|chr21 (16224883-16224607) |
|
138-411, gnl|Hg17|chr15 (88594850-88595123) |
|
138-411, gnl|Mm7|chr7 (76115458-76115731) |
| |
|
456-571, gnl|bosTau2|chr26 (12880591-12880476) |
|
456-571, gnl|canFam2|chr3 (56060486-56060645) |
|
456-571, gnl|danRer3|chr12 (26508370-26508520) |
|
456-571, gnl|dasNov1|scaffold_17211 (376-523) |
|
456-571, gnl|echTel1|scaffold_311655 (48319-48159) |
|
456-571, gnl|fr1|chrUn (215597677-215597823) |
|
456-571, gnl|galGal2|chr10 (20630969-20631125) |
|
456-571, gnl|hg17|chr15 (88597465-88597625) |
|
456-571, gnl|Hg17|chr15 (88597488-88597603) |
|
456-571, gnl|loxAfr1|scaffold_8298 (65207-65344) |
|
456-571, gnl|mm7|chr7 (76118280-76118436) |
|
456-571, gnl|Mm7|chr7 (76118303-76118418) |
|
456-571, gnl|monDom2|scaffold_45 (10156435-10156281) |
|
456-571, gnl|panTro1|chr16 (89526060-89526220) |
|
456-571, gnl|rheMac2|chr7 (69901952-69902112) |
|
456-571, gnl|rn3|chr1 (136140172-136140327) |
|
456-571, gnl|tetNig1|chr2 (1446014-1445878) |
|
456-571, gnl|xenTro1|scaffold_130 (2716-2569) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
138-411, gnl|bosTau2|chr21 (16224883-16224607) |
|
138-411, gnl|Hg17|chr15 (88594850-88595123) |
|
138-411, gnl|Mm7|chr7 (76115458-76115731) |
| |
|
456-571, gnl|bosTau2|chr26 (12880591-12880476) |
|
456-571, gnl|canFam2|chr3 (56060486-56060645) |
|
456-571, gnl|danRer3|chr12 (26508370-26508520) |
|
456-571, gnl|dasNov1|scaffold_17211 (376-523) |
|
456-571, gnl|echTel1|scaffold_311655 (48319-48159) |
|
456-571, gnl|fr1|chrUn (215597677-215597823) |
|
456-571, gnl|galGal2|chr10 (20630969-20631125) |
|
456-571, gnl|hg17|chr15 (88597465-88597625) |
|
456-571, gnl|Hg17|chr15 (88597488-88597603) |
|
456-571, gnl|loxAfr1|scaffold_8298 (65207-65344) |
|
456-571, gnl|mm7|chr7 (76118280-76118436) |
|
456-571, gnl|Mm7|chr7 (76118303-76118418) |
|
456-571, gnl|monDom2|scaffold_45 (10156435-10156281) |
|
456-571, gnl|panTro1|chr16 (89526060-89526220) |
|
456-571, gnl|rheMac2|chr7 (69901952-69902112) |
|
456-571, gnl|rn3|chr1 (136140172-136140327) |
|
456-571, gnl|tetNig1|chr2 (1446014-1445878) |
|
456-571, gnl|xenTro1|scaffold_130 (2716-2569) |
