Non-Coding RNA Search

Tra1-TCH01F090084

Sequence:


               
               TAAGCATTAGCTGTCTTTCCTGGGTGGCTCGCCAGGCCCTTTCTCCCTTCCTTTGGGCTG
ACAGATGAAGGCAGGCACCATGCTAAGGTACCTGTTTTCAAGTGCACTGCATGAGGGGTA
TTCACGTTATTTCTGGTTTGTGGAGCATCTCCCCCCCCCCACCCCGGAGGACAGAGTTTA
CTTTGTGTAATGGTAGCATCTTGCTGCAACACTGTCTCTTTAAGAGAACTGCATCCTCCG
CTTTGCAGATTTTGAGGCTTCTGACCGAGTCTAGTTCAGGTGGCGAGGCCTCTCAGGGAC
CACAGGGAGGGTCTCTCCCAGACATAAAACTGAGGCAGCGTGCAGAGGTGATCCCCTGGC
CATAGAAATTAGTAGAAAATGGAGAGCCTTGTGGCTAGCTTGCCCATCAAGAAGAGAATG
ATTTCTTAAGTTGGGCCGGATAATCCTGGTCTACACCTCCGGTTGCAGACCAGACTCCTT
CATCAGGGTTCGTCTCAGAAGATGTGGTATCCTTTGCATTTGGAATTAGCTGCATGTAAT
GAATTCTGGGTTTTACATATTTATTACCATTGTCCATGCTCCCTCTGGTCTTGTAACCAC
TTCTCCTACCCGCCTGACTTCCTCCAGGGAGAACGGGAGGCAGTCAAGGAGCCAACTCGG
GGGCGGGGAAGCTCTGTCTGACTTACAGTCGAATAAGCAGGGTCCAGAGCATGACTCCTT
CAGACATTCATTTACTCCAACAAATGTACACTGCAGGCCTGCCCTGGCCAGGCCCTGTGC
TGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGCATTAGCTGTCTTTCCTGGGTGGCTCGCCAGGCCCTTTCTCCCTTCCTTTGGGCTG
ACAGATGAAGGCAGGCACCATGCTAAGGTACCTGTTTTCAAGTGCACTGCATGAGGGGTA
TTCACGTTATTTCTGGTTTGTGGAGCATCTCCCCCCCCCCACCCCGGAGGACAGAGTTTA
CTTTGTGTAATGGTAGCATCTTGCTGCAACACTGTCTCTTTAAGAGAACTGCATCCTCCG
CTTTGCAGATTTTGAGGCTTCTGACCGAGTCTAGTTCAGGTGGCGAGGCCTCTCAGGGAC
CACAGGGAGGGTCTCTCCCAGACATAAAACTGAGGCAGCGTGCAGAGGTGATCCCCTGGC
CATAGAAATTAGTAGAAAATGGAGAGCCTTGTGGCTAGCTTGCCCATCAAGAAGAGAATG
ATTTCTTAAGTTGGGCCGGATAATCCTGGTCTACACCTCCGGTTGCAGACCAGACTCCTT
CATCAGGGTTCGTCTCAGAAGATGTGGTATCCTTTGCATTTGGAATTAGCTGCATGTAAT
GAATTCTGGGTTTTACATATTTATTACCATTGTCCATGCTCCCTCTGGTCTTGTAACCAC
TTCTCCTACCCGCCTGACTTCCTCCAGGGAGAACGGGAGGCAGTCAAGGAGCCAACTCGG
GGGCGGGGAAGCTCTGTCTGACTTACAGTCGAATAAGCAGGGTCCAGAGCATGACTCCTT
CAGACATTCATTTACTCCAACAAATGTACACTGCAGGCCTGCCCTGGCCAGGCCCTGTGC
TGAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-160, - strand, RNAz p=0.845829
               

               
               41-159, + strand, RNAz p=0.900318

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-160, - strand, RNAz p=0.845829
               

               
               41-159, + strand, RNAz p=0.900318

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-238, gnl|bosTau2|chr11 (76196892-76196663)
               

               
               1-238, gnl|canFam2|chr9 (62669827-62669620)
               

               
               1-238, gnl|echTel1|scaffold_259421 (533-339)
               

               
               1-238, gnl|hg17|chr9 (123330485-123330666)
               

               
               1-238, gnl|Hg17|chr9 (123330750-123330527)
               

               
               1-238, gnl|loxAfr1|scaffold_19095 (12740-12557)
               

               
               1-238, gnl|mm7|chr2 (37891121-37891292)
               

               
               1-238, gnl|Mm7|chr2 (37891372-37891167)
               

               
               1-238, gnl|monDom2|scaffold_38 (17140692-17140872)
               

               
               1-238, gnl|oryCun1|scaffold_210157 (83755-83804)
               

               
               1-238, gnl|panTro1|chr11 (108073981-108074161)
               

               
               1-238, gnl|rheMac2|chr15 (12248625-12248442)
               

               
               1-238, gnl|rn3|chr3 (17542716-17542885)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-238, gnl|bosTau2|chr11 (76196892-76196663)
               

               
               1-238, gnl|canFam2|chr9 (62669827-62669620)
               

               
               1-238, gnl|echTel1|scaffold_259421 (533-339)
               

               
               1-238, gnl|hg17|chr9 (123330485-123330666)
               

               
               1-238, gnl|Hg17|chr9 (123330750-123330527)
               

               
               1-238, gnl|loxAfr1|scaffold_19095 (12740-12557)
               

               
               1-238, gnl|mm7|chr2 (37891121-37891292)
               

               
               1-238, gnl|Mm7|chr2 (37891372-37891167)
               

               
               1-238, gnl|monDom2|scaffold_38 (17140692-17140872)
               

               
               1-238, gnl|oryCun1|scaffold_210157 (83755-83804)
               

               
               1-238, gnl|panTro1|chr11 (108073981-108074161)
               

               
               1-238, gnl|rheMac2|chr15 (12248625-12248442)
               

               
               1-238, gnl|rn3|chr3 (17542716-17542885)

	1-160, - strand, RNAz p=0.845829
	41-159, + strand, RNAz p=0.900318

	1-238, gnl\|bosTau2\|chr11 (76196892-76196663)
	1-238, gnl\|canFam2\|chr9 (62669827-62669620)
	1-238, gnl\|echTel1\|scaffold_259421 (533-339)
	1-238, gnl\|hg17\|chr9 (123330485-123330666)
	1-238, gnl\|Hg17\|chr9 (123330750-123330527)
	1-238, gnl\|loxAfr1\|scaffold_19095 (12740-12557)
	1-238, gnl\|mm7\|chr2 (37891121-37891292)
	1-238, gnl\|Mm7\|chr2 (37891372-37891167)
	1-238, gnl\|monDom2\|scaffold_38 (17140692-17140872)
	1-238, gnl\|oryCun1\|scaffold_210157 (83755-83804)
	1-238, gnl\|panTro1\|chr11 (108073981-108074161)
	1-238, gnl\|rheMac2\|chr15 (12248625-12248442)
	1-238, gnl\|rn3\|chr3 (17542716-17542885)