Non-Coding RNA Search

Tra1-TCH01F090085

Sequence:


               
               AGCAAAACAAAAAAACTAGTTAAGAATCCACTAGGGgttcccattatagctcagtgactt
aggaacccaactagtaaccatgaggatgtgggttcgatccctggccttagtgggttaaag
atctggcattgctgtgagctgccgtgtagattacagatgagacttggatctggtgttgct
gtggctatggcataggctggcagctgcagcttcaattcagcccctaccccggggaatttc
catatgctgcaggtgtggccctAAAAAAAAAAATCAGAACTAGAAGTAAAATCAAGTTTA
ACTTTTGTTATGTTTTCCAGTGTATCAAGATGAATGTGTGCTACTAAAGAGCTTTTGGTA
TTGGACCAAAAGAAAAAAGTATTTCTAGCCTATATCTTTTGACAGAGAGTTTAACACAGA
ACTTTGACCTAGCAGTGAGTTTTGCTGTATTCATTCTGGCTTAAGAAATTTGTGTTAGTA
GTATTTATAGGAAATAGCCTCCCCCCCTTTTCCTTTCTTGTTCTTTACCCTTCTCTCAAT
TTGGGTTTTGGGGATTGGTTTCCTTTATATGAGTTAAGGCAAAAGTATATAAAGGCTTTT
TCTCCCCCCTTATTTATAGCACCTATCCAAATTGTGGGCTCATAATAAGCGCTCAGTAAA
GGCATGTTGATTTTTGTGGCTGTAAATTATACTGGCTTTGAATCAATATAAATTAGCAAG
GGGGGTTACAGAACAGAATTGCAGCATTCTCTGGTTGAGAGGTCAGCCCTCAGCTAAAAA
TGTTGGGTTGGAAACTAGCCTCACAACCAGAAGCTGTTCCTTGCCTCTGTCCTTTTTCAG
TCTAATATAGTGTACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAAAACAAAAAAACTAGTTAAGAATCCACTAGGGgttcccattatagctcagtgactt
aggaacccaactagtaaccatgaggatgtgggttcgatccctggccttagtgggttaaag
atctggcattgctgtgagctgccgtgtagattacagatgagacttggatctggtgttgct
gtggctatggcataggctggcagctgcagcttcaattcagcccctaccccggggaatttc
catatgctgcaggtgtggccctAAAAAAAAAAATCAGAACTAGAAGTAAAATCAAGTTTA
ACTTTTGTTATGTTTTCCAGTGTATCAAGATGAATGTGTGCTACTAAAGAGCTTTTGGTA
TTGGACCAAAAGAAAAAAGTATTTCTAGCCTATATCTTTTGACAGAGAGTTTAACACAGA
ACTTTGACCTAGCAGTGAGTTTTGCTGTATTCATTCTGGCTTAAGAAATTTGTGTTAGTA
GTATTTATAGGAAATAGCCTCCCCCCCTTTTCCTTTCTTGTTCTTTACCCTTCTCTCAAT
TTGGGTTTTGGGGATTGGTTTCCTTTATATGAGTTAAGGCAAAAGTATATAAAGGCTTTT
TCTCCCCCCTTATTTATAGCACCTATCCAAATTGTGGGCTCATAATAAGCGCTCAGTAAA
GGCATGTTGATTTTTGTGGCTGTAAATTATACTGGCTTTGAATCAATATAAATTAGCAAG
GGGGGTTACAGAACAGAATTGCAGCATTCTCTGGTTGAGAGGTCAGCCCTCAGCTAAAAA
TGTTGGGTTGGAAACTAGCCTCACAACCAGAAGCTGTTCCTTGCCTCTGTCCTTTTTCAG
TCTAATATAGTGTACTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               729-842, + strand, RNAz p=0.934917

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               729-842, + strand, RNAz p=0.934917

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               736-819, + strand, RNAmicro p=0.992235

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               736-819, + strand, RNAmicro p=0.992235

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               264-562, gnl|bosTau2|chr13 (47621364-47621063)
               

               
               264-562, gnl|Mm7|chr2 (154878109-154878398)
               


               
               661-842, gnl|bosTau2|chr13 (47620828-47620644)
               

               
               661-842, gnl|Hg17|chr20 (32419960-32420134)
               

               
               661-842, gnl|Mm7|chr2 (154878513-154878677)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-562, gnl|bosTau2|chr13 (47621364-47621063)
               

               
               264-562, gnl|Mm7|chr2 (154878109-154878398)
               


               
               661-842, gnl|bosTau2|chr13 (47620828-47620644)
               

               
               661-842, gnl|Hg17|chr20 (32419960-32420134)
               

               
               661-842, gnl|Mm7|chr2 (154878513-154878677)

	264-562, gnl\|bosTau2\|chr13 (47621364-47621063)
	264-562, gnl\|Mm7\|chr2 (154878109-154878398)

	661-842, gnl\|bosTau2\|chr13 (47620828-47620644)
	661-842, gnl\|Hg17\|chr20 (32419960-32420134)
	661-842, gnl\|Mm7\|chr2 (154878513-154878677)