Non-Coding RNA Search

Tra1-TCH01F100042

Sequence:


               
               CAGCCTGTCCGAACTCCTCCATTCCATCAACCTCTGGCAGAAGACGTTCAAGGTCATCAG
AGGCAAGTTCGGCACCAGCGTCCTCTCCTATTTCAACTTTCTGAGATGGCTTTTGAAGTT
CAACGTTCTCGCGTTCGTTGTGACCTTCAGTTTCATCATAATCCCTCAGTTAACCGTGGC
CCCAAAGAACCACCTCCAATTCACTGGACTGGAATTTGTAACCGGGGCGGGTTATTTTAG
CGACACAGTGATGTACTATGGCTTTTACACCAATTCGACCATCCGGCACGGGGACGGCGG
GGCCTCCTACAACATGCAGCTGGCCTACATCTTCACCATCGGAGCGTATTTGGTCACCTG
CTTTTTCAGTTTGCTGTTCAGCATGGCCAGGTATTTCCGGAACAACTTCATAAACCCCCA
TGTTTACTCCCGAGGGATTGCTAAACTCATTTTTTGCTGGGATTTCACCGTTACGCATGA
AAGTGCTGTAAAGCTGAAACAGAAGAATCTGAGCACTGAGATACAGGAGAACCTGTCAGA
AATCCGCCAGGAGAATGTCAAGTTAACATTCAAACAGCAGTTGGTCCACTTCTCTGCCCA
CCTGGCAGCCTGGGTTGTGTCTACGGGAGTGACCATTGCCTGCTGTGTGGCTGTTTATTA
CCTGGCTGAGAATAACTCAGAGTTCCTGGCGAACCACAGGGACCCCGGGGCGGTGCTGTT
ACTGCCTTTTGTTGTGTCCTGCATCAACTTGGCTGTGCCTCGGTTCTACTCCATGTTCAG
GCTGGTGGAGCATTATGAGATGCCAAGGCACGAAGTCTACAGCCTCCTGATCCGGGACAT
CTTTCTGAAAATATCAATCATTGGAATTCTTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTGTCCGAACTCCTCCATTCCATCAACCTCTGGCAGAAGACGTTCAAGGTCATCAG
AGGCAAGTTCGGCACCAGCGTCCTCTCCTATTTCAACTTTCTGAGATGGCTTTTGAAGTT
CAACGTTCTCGCGTTCGTTGTGACCTTCAGTTTCATCATAATCCCTCAGTTAACCGTGGC
CCCAAAGAACCACCTCCAATTCACTGGACTGGAATTTGTAACCGGGGCGGGTTATTTTAG
CGACACAGTGATGTACTATGGCTTTTACACCAATTCGACCATCCGGCACGGGGACGGCGG
GGCCTCCTACAACATGCAGCTGGCCTACATCTTCACCATCGGAGCGTATTTGGTCACCTG
CTTTTTCAGTTTGCTGTTCAGCATGGCCAGGTATTTCCGGAACAACTTCATAAACCCCCA
TGTTTACTCCCGAGGGATTGCTAAACTCATTTTTTGCTGGGATTTCACCGTTACGCATGA
AAGTGCTGTAAAGCTGAAACAGAAGAATCTGAGCACTGAGATACAGGAGAACCTGTCAGA
AATCCGCCAGGAGAATGTCAAGTTAACATTCAAACAGCAGTTGGTCCACTTCTCTGCCCA
CCTGGCAGCCTGGGTTGTGTCTACGGGAGTGACCATTGCCTGCTGTGTGGCTGTTTATTA
CCTGGCTGAGAATAACTCAGAGTTCCTGGCGAACCACAGGGACCCCGGGGCGGTGCTGTT
ACTGCCTTTTGTTGTGTCCTGCATCAACTTGGCTGTGCCTCGGTTCTACTCCATGTTCAG
GCTGGTGGAGCATTATGAGATGCCAAGGCACGAAGTCTACAGCCTCCTGATCCGGGACAT
CTTTCTGAAAATATCAATCATTGGAATTCTTTGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61862558|ref|XP_591622.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61862558|ref|XP_591622.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.506843

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.506843

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC027602, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC027602, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-230, gnl|bosTau2|chr25 (16736169-16736398)
               

               
               1-230, gnl|Hg17|chr16 (19382619-19382848)
               

               
               1-230, gnl|Mm7|chr7 (114564801-114565030)
               


               
               380-523, gnl|bosTau2|chr25 (16742843-16742986)
               

               
               380-523, gnl|Hg17|chr16 (19388502-19388645)
               

               
               380-523, gnl|Mm7|chr7 (114570369-114570512)
               


               
               681-835, gnl|bosTau2|chr25 (16747326-16747480)
               

               
               681-835, gnl|Hg17|chr16 (19392946-19393100)
               

               
               681-835, gnl|Mm7|chr7 (114575081-114575235)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-230, gnl|bosTau2|chr25 (16736169-16736398)
               

               
               1-230, gnl|Hg17|chr16 (19382619-19382848)
               

               
               1-230, gnl|Mm7|chr7 (114564801-114565030)
               


               
               380-523, gnl|bosTau2|chr25 (16742843-16742986)
               

               
               380-523, gnl|Hg17|chr16 (19388502-19388645)
               

               
               380-523, gnl|Mm7|chr7 (114570369-114570512)
               


               
               681-835, gnl|bosTau2|chr25 (16747326-16747480)
               

               
               681-835, gnl|Hg17|chr16 (19392946-19393100)
               

               
               681-835, gnl|Mm7|chr7 (114575081-114575235)

	1-230, gnl\|bosTau2\|chr25 (16736169-16736398)
	1-230, gnl\|Hg17\|chr16 (19382619-19382848)
	1-230, gnl\|Mm7\|chr7 (114564801-114565030)

	380-523, gnl\|bosTau2\|chr25 (16742843-16742986)
	380-523, gnl\|Hg17\|chr16 (19388502-19388645)
	380-523, gnl\|Mm7\|chr7 (114570369-114570512)

	681-835, gnl\|bosTau2\|chr25 (16747326-16747480)
	681-835, gnl\|Hg17\|chr16 (19392946-19393100)
	681-835, gnl\|Mm7\|chr7 (114575081-114575235)