Non-Coding RNA Search

Tra1-TCH01F100086

Sequence:


               
               AGTATTCAGTACCTCTTGGCGAAGCACTCCGCCTAAGGGGGTGCTTCGGCACCTTGGCGT
CTCCAGGCTGCAATTAAAATAATTCAGCACTGGGGCTGGCCTTGCAGAAATAGTCCTTCT
TGCCTTTGGAACACACAGGGCATTTTCCAATCCCCCCATGGAGCAGGTTCAAGATCTCCC
TTGTAGAGCGGAGGGCAGTGGAATTTATTAACAAGACTCGGACTCTATTTGCATGTTACA
CCCTCTGTGGTGGCTGAACATAATGTCTTTTGTAGACATGGTACCGACAGAAAGGTCACG
GTGTGTGTGTGTGTGTGTGGGAGGGGCCGGGTAGCAAGGGGACATGCACGGGAGTTTGGC
AGAGCCCGTTTTTAGAAGCCAGCCTTCCACCATAGCCAAGTCGGCAGTGTCCTTTATCCT
GAATCCTTCGCAGGAAAGACGCAGGGTTAGACACCCCCCGAAATGGTCTTTTTCCAAGCC
AGAGCCTCAGGGATGTTGTATAAACAGGTTAAGGCCCCCGTGGTGGTGGTGGGGAGCGGG
GGGGACTTGATTCTGTTTGCCAGGTGACTCTGGTGTTAACACTAAAATAAGAGCATTTCC
AGGTTTTACAGAGATTTGGTTTGTCAGGTTAGGTACTTTCAACAGATGGAAAATCCGTAA
ATTCCCTCAAATTACTTTATGACCAGGATCACTGGGGGAGGTTCTTTTAAAAACTGCCAA
CTCTCAGGTCCCCACCCAAGGGGATGTGGTCAAGGATGTCTAGGATGGAACTTGTGTTTT
AACACGTGTCCCTGGTGAGCCTTTCACTCANGCAGTTGTGGGGAGGACTGCTCTGAAATA
AATGTCCATAGAATTCTCTGTGCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATTCAGTACCTCTTGGCGAAGCACTCCGCCTAAGGGGGTGCTTCGGCACCTTGGCGT
CTCCAGGCTGCAATTAAAATAATTCAGCACTGGGGCTGGCCTTGCAGAAATAGTCCTTCT
TGCCTTTGGAACACACAGGGCATTTTCCAATCCCCCCATGGAGCAGGTTCAAGATCTCCC
TTGTAGAGCGGAGGGCAGTGGAATTTATTAACAAGACTCGGACTCTATTTGCATGTTACA
CCCTCTGTGGTGGCTGAACATAATGTCTTTTGTAGACATGGTACCGACAGAAAGGTCACG
GTGTGTGTGTGTGTGTGTGGGAGGGGCCGGGTAGCAAGGGGACATGCACGGGAGTTTGGC
AGAGCCCGTTTTTAGAAGCCAGCCTTCCACCATAGCCAAGTCGGCAGTGTCCTTTATCCT
GAATCCTTCGCAGGAAAGACGCAGGGTTAGACACCCCCCGAAATGGTCTTTTTCCAAGCC
AGAGCCTCAGGGATGTTGTATAAACAGGTTAAGGCCCCCGTGGTGGTGGTGGGGAGCGGG
GGGGACTTGATTCTGTTTGCCAGGTGACTCTGGTGTTAACACTAAAATAAGAGCATTTCC
AGGTTTTACAGAGATTTGGTTTGTCAGGTTAGGTACTTTCAACAGATGGAAAATCCGTAA
ATTCCCTCAAATTACTTTATGACCAGGATCACTGGGGGAGGTTCTTTTAAAAACTGCCAA
CTCTCAGGTCCCCACCCAAGGGGATGTGGTCAAGGATGTCTAGGATGGAACTTGTGTTTT
AACACGTGTCCCTGGTGAGCCTTTCACTCANGCAGTTGTGGGGAGGACTGCTCTGAAATA
AATGTCCATAGAATTCTCTGTGCTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               4-121, - strand, RNAz p=0.746557

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-121, - strand, RNAz p=0.746557

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-692, gnl|bosTau2|chr18 (3272005-3271311)
               

               
               4-692, gnl|Hg17|chr16 (77692063-77692860)
               

               
               4-692, gnl|Mm7|chr8 (113856687-113857475)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-692, gnl|bosTau2|chr18 (3272005-3271311)
               

               
               4-692, gnl|Hg17|chr16 (77692063-77692860)
               

               
               4-692, gnl|Mm7|chr8 (113856687-113857475)

	4-692, gnl\|bosTau2\|chr18 (3272005-3271311)
	4-692, gnl\|Hg17\|chr16 (77692063-77692860)
	4-692, gnl\|Mm7\|chr8 (113856687-113857475)