Non-Coding RNA Search

Tra1-TCH01F110083

Sequence:


               
               GGATGGAAAAAGCCAATAGTCTTCATCTAATCAAACTGAGTGATCCTGATTATGTCAGGA
CTCTGGAAAATTGCATCCAGTTTGGCACCCCTGTGTTGCTGGAAAATGTGGGAGAAGAAC
TGGATCCAATTCTGGAACCTCTTCTACTAAAGCAGACCTTTAAGCAGGGTGGGAGCACGT
GTATCCGACTTGGGGACTCCACCATTGAATATTCACCAGACTTCCGCTTCTATATCACTA
CCAAGCTGAGAAATCCTCATTACCTTCCTGAAACTTCAGTAAAGGTGACGCTATTAAACT
TCATGACCACGTCTGAGGGAATGCAGGATCAACTTTTGGGAATTGTAGTGGCACGAGAAA
GGCCCGACCTTGAAGAAGAAAAGCAAGCCTTGATATTACAAGGAGCCGAAAACAAAAGGC
AGTTAAAAGAAATAGAAGACAAGATTTTAGAAGTCCTTTCATCTTCAGAAGGCAATATAT
TAGAAGATGAAACTGCCATTAAGATATTATCTTCCTCCAAGGCTTTGGCTAATGAGATTT
CTCAAAAGCAGGAAGTAGCCGAGGAGACAGAGAAAAAGATTGATACCACCCGCATGGGCT
ATCGACCTATTGCTGTTCATTCCACCATCCTGTTTTTTTCTATTGCTGATTTAGCTAACA
TTGAGCCCATGTACCAATACTCACTGACCTGGTTTATTAACCTTTTCATCCTGTCTATTG
AAAATTCAGAGAAATCAGAAATTTTGTCAAAAAGGCTTCAAATTCTCAAGGATCATTTCA
CTTATTCACTTTATGTTAATGTCTGCCGATCCCTTTTTGAAAGGATAAACTACTCTTTTC
CTTTTGCCTTACTGTAAATCTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGGAAAAAGCCAATAGTCTTCATCTAATCAAACTGAGTGATCCTGATTATGTCAGGA
CTCTGGAAAATTGCATCCAGTTTGGCACCCCTGTGTTGCTGGAAAATGTGGGAGAAGAAC
TGGATCCAATTCTGGAACCTCTTCTACTAAAGCAGACCTTTAAGCAGGGTGGGAGCACGT
GTATCCGACTTGGGGACTCCACCATTGAATATTCACCAGACTTCCGCTTCTATATCACTA
CCAAGCTGAGAAATCCTCATTACCTTCCTGAAACTTCAGTAAAGGTGACGCTATTAAACT
TCATGACCACGTCTGAGGGAATGCAGGATCAACTTTTGGGAATTGTAGTGGCACGAGAAA
GGCCCGACCTTGAAGAAGAAAAGCAAGCCTTGATATTACAAGGAGCCGAAAACAAAAGGC
AGTTAAAAGAAATAGAAGACAAGATTTTAGAAGTCCTTTCATCTTCAGAAGGCAATATAT
TAGAAGATGAAACTGCCATTAAGATATTATCTTCCTCCAAGGCTTTGGCTAATGAGATTT
CTCAAAAGCAGGAAGTAGCCGAGGAGACAGAGAAAAAGATTGATACCACCCGCATGGGCT
ATCGACCTATTGCTGTTCATTCCACCATCCTGTTTTTTTCTATTGCTGATTTAGCTAACA
TTGAGCCCATGTACCAATACTCACTGACCTGGTTTATTAACCTTTTCATCCTGTCTATTG
AAAATTCAGAGAAATCAGAAATTTTGTCAAAAAGGCTTCAAATTCTCAAGGATCATTTCA
CTTATTCACTTTATGTTAATGTCTGCCGATCCCTTTTTGAAAGGATAAACTACTCTTTTC
CTTTTGCCTTACTGTAAATCTGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61826433|ref|XP_605009.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826433|ref|XP_605009.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               417-575, + strand, RNAz p=0.991972

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               417-575, + strand, RNAz p=0.991972

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               6-175, gnl|bosTau2|chr22 (33232175-33232006)
               

               
               6-175, gnl|Hg17|chr16 (20883421-20883253)
               

               
               6-175, gnl|Mm7|chr14 (24286515-24286681)
               


               
               417-755, gnl|bosTau2|chr2 (42623398-42623060)
               

               
               417-755, gnl|Hg17|chr2 (196507195-196506857)
               

               
               417-755, gnl|Mm7|chr1 (46527209-46527547)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-175, gnl|bosTau2|chr22 (33232175-33232006)
               

               
               6-175, gnl|Hg17|chr16 (20883421-20883253)
               

               
               6-175, gnl|Mm7|chr14 (24286515-24286681)
               


               
               417-755, gnl|bosTau2|chr2 (42623398-42623060)
               

               
               417-755, gnl|Hg17|chr2 (196507195-196506857)
               

               
               417-755, gnl|Mm7|chr1 (46527209-46527547)

	6-175, gnl\|bosTau2\|chr22 (33232175-33232006)
	6-175, gnl\|Hg17\|chr16 (20883421-20883253)
	6-175, gnl\|Mm7\|chr14 (24286515-24286681)

	417-755, gnl\|bosTau2\|chr2 (42623398-42623060)
	417-755, gnl\|Hg17\|chr2 (196507195-196506857)
	417-755, gnl\|Mm7\|chr1 (46527209-46527547)